RetrogeneDB ID: retro_ggor_871

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:46755393..46755745(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C20ORF27
• Ensembl ID: ENSGGOG00000016987
• Aliases: None
• Description: None

Sequence

>retro_ggor_871
TTCCTGAAGATCCTGCACAGGTATGAGATTACCTTTGCTCCGCCCCAGTGCACAGGCTGAGCAAGGACGTCCGCCAGGCA
CTTGTCCCCAGCCTGCACCTGAAGCTTCTCAGCGTCCTACCCTTCCCTGAAGGTTATATTGTCAAGTGCGAGTACTAGGC
GCACAAAGAAGGGGTCCTCAAAGAGGGGATGCTACTAGTCTGGGAAGGTGGCACCAGCACCTGCGTGCGTGGGAGGTGCA
AGCCTGCATCATGGGCTGACGCCATGGCACGTGCATGCTGCTGGACGGTGTCAAATGTGTGGGTGCCAAGCTGGAATACC
ACTCGGAGCACAGCGACTGGCATGGCTTTGAC

Alignment

ORF - retro_ggor_871 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.17 %
• Parental protein coverage: 67.82 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FLKILHRYEITFTLP-PVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVLKEEILLACE
          FLKILHRYEITF..P.PVHRLSKDVR.A.VPSLHLKLLSV.P.PEGY.VKCEY.AHKEGVLKE..LL..E
Retrocopy FLKILHRYEITFAPP<PVHRLSKDVRQALVPSLHLKLLSVLPFPEGYIVKCEY*AHKEGVLKEGMLLVWE

Parental  GGTGTCVR-VTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
          GGT.TCVR...VQA..M...HGT.MLLDGVKCVGA.LEY.SEHSDWHGFD
Retrocopy GGTSTCVR<WEVQACIMG*RHGTCMLLDGVKCVGAKLEYHSEHSDWHGFD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	17.98 RPM
SRP007412_cerebellum	0.04 RPM	13.79 RPM
SRP007412_heart	0.00 RPM	4.00 RPM
SRP007412_kidney	0.00 RPM	6.54 RPM
SRP007412_liver	0.00 RPM	5.94 RPM
SRP007412_testis	0.00 RPM	28.39 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_871 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_871 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000021194	1 retrocopy	retro_cjac_3292,
Homo sapiens	ENSG00000101220	2 retrocopies	retro_hsap_1114, retro_hsap_1673,
Gorilla gorilla	ENSGGOG00000016987	1 retrocopy	retro_ggor_871 ,
Macaca mulatta	ENSMMUG00000022079	1 retrocopy	retro_mmul_1578,
Nomascus leucogenys	ENSNLEG00000007653	1 retrocopy	retro_nleu_194,
Pongo abelii	ENSPPYG00000010813	1 retrocopy	retro_pabe_923,
Pan troglodytes	ENSPTRG00000013204	2 retrocopies	retro_ptro_1136, retro_ptro_685,