RetrogeneDB ID: retro_ggor_2488

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 6:150282236..150282451(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000197416
• Ensembl ID: ENSGGOG00000016835
• Aliases: None
• Description: None

Sequence

>retro_ggor_2488
GAAAAGTGTGAGGAAACCACACCAGGTGGCCATAAAATCAAGAGTACCATAACCTTAGATAATGACTCCCTGATTCAGGT
TCAGGACTGGGATCACAAGGAGACCTCATTGGGAGAAAGTTGGTGGGTGAGAAGATGGGGGTGGAAAGTGCCGTGAGCAA
TATTACCTGTGCTCAGATATAGGGGAGAGAATGAACAAATTCAGTCTCAAACTCC

Alignment

ORF - retro_ggor_2488 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.9 %
• Parental protein coverage: 51.43 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EEFEEITSGGHKTKSKVTLDKESLIQVQDWDGKETT-ITRKLVDGKMVVESTVNSVICTRTYEKVSSNSV
          E..EE.T.GGHK.KS..TLD..SLIQVQDWD.KET..I.RKLV..KM.VES.V....C.........NSV
Retrocopy EKCEETTPGGHKIKSTITLDNDSLIQVQDWDHKETS<IGRKLVGEKMGVESAVSNITCAQI*GRE*TNSV

Parental  SNS
          SNS
Retrocopy SNS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	28.80 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2488 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2488 has 6 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_3679
Pan troglodytes	retro_ptro_2493
Pongo abelii	retro_pabe_3016
Macaca mulatta	retro_mmul_1787
Callithrix jacchus	retro_cjac_2486
Equus caballus	retro_ecab_761

---

Parental genes homology:

Parental genes homology involve 15 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014554	1 retrocopy	retro_amel_945,
Callithrix jacchus	ENSCJAG00000000433	1 retrocopy	retro_cjac_2486,
Equus caballus	ENSECAG00000023552	1 retrocopy	retro_ecab_761,
Homo sapiens	ENSG00000197416	1 retrocopy	retro_hsap_3679,
Gorilla gorilla	ENSGGOG00000005964	8 retrocopies	retro_ggor_1005, retro_ggor_1163, retro_ggor_2079, retro_ggor_2276, retro_ggor_2284, retro_ggor_2563, retro_ggor_2931, retro_ggor_940,
Gorilla gorilla	ENSGGOG00000014432	1 retrocopy	retro_ggor_990,
Gorilla gorilla	ENSGGOG00000016835	1 retrocopy	retro_ggor_2488 ,
Gorilla gorilla	ENSGGOG00000025475	1 retrocopy	retro_ggor_489,
Latimeria chalumnae	ENSLACG00000008511	3 retrocopies	retro_lcha_37, retro_lcha_45, retro_lcha_57,
Microcebus murinus	ENSMICG00000005319	1 retrocopy	retro_mmur_1131,
Macaca mulatta	ENSMMUG00000019337	1 retrocopy	retro_mmul_1787,
Nomascus leucogenys	ENSNLEG00000002515	1 retrocopy	retro_nleu_528,
Oryzias latipes	ENSORLG00000008282	1 retrocopy	retro_olat_7,
Pongo abelii	ENSPPYG00000018703	1 retrocopy	retro_pabe_3016,
Pan troglodytes	ENSPTRG00000022654	1 retrocopy	retro_ptro_2493,