RetrogeneDB ID: retro_ggor_2026

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 4:42401422..42402640(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000001860
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DCAF4
• Ensembl ID: ENSGGOG00000003815
• Aliases: None
• Description: None

Sequence

>retro_ggor_2026
CCTGTCACGAGGAACATTCCGCAGGAGGAAATGGAGGCTGAAAGGCTGCGACTCCTCGAGGAAGAGGCCAAGCGGAAAAA
GGTAGCCAGAATGGGATTTAATGCATCTTCCATGCTCCGAAAAAGCCAGCTAGGTTTCCTCAACGTAACCAGTTACTCCC
GTTTAGCCAACGAGCTGCGTGTGAGCTGCATGGAGCGGAAAAAGGTCCAAATTCGGAGCTTGGATCCCTCCTCTTTGGCG
AGCGACCGATTTAACTTCATTCTGGCGAGTACCAACAGCGACCAGCTCTTCGTAGTGAACCAGGTCGAAGTCGAAGGCTC
CAAGTACGGCATCATCAGCCTGCGAACTCTGAAGATCCCTTCGTTCCACGTGTACGTTCTCAGAAACCTTTACGTCCCCA
ACCGGAAGGTGAAGTCCCTGTGCTGGGCCTCGCTGAACCAGTTGGACTCTCACGTTCTGCTGTGCTTCGAGGGAATCACA
GATGCTCCAAGCTGTGCAGTGCTGCTCCCAGCGTCGCGATTCTTAAGTGTTCACACAAGAGTTAACCAGCCTGGCATGCT
CTGCAGTTTCCAGATCCCAGAGGCCTGGTCCTGTGCGTGGTCCCTCAACACCCGGGCATATAACTGCTTTAGTGCAGGCT
TGTCTCAGCAGGTCCTGTTGACCAGCGTGGCGACGGGACACCAGCAGTCATTTGATACCAGCAGTGATGTCTTGGCCCAG
CAGTTTGCTAGTACGGCTCCTTTGCTGTTTAATGGCTGTCGCTCCGGGGAGATCTTTGCCATTGATCTGCGTTGTAGAAA
TCGAGGCAAGGGGTGGAGGGCCACTCGCCTGTTCCATGACTCAGCAGTGACCTCTGTGCAAATCCTCCAAGAAGAGCAAT
GCCTGATGGCATCAGACATGACTGGAAAGATCAAGCTGTGGGATCTGAGGGCCACTAAATGTGTAAGGCAGTACGAAGGT
CACGTGAATGAGTCCGCCTATCTGCCCCTGCATGTGCACGAGGAAGAGGGAATCGTGGTGGCAGTGGGCCAGGACTGCTA
CACGAGAATCTGGAGCCTCCATGATGCTCACCTGCTCAGAACCATCCCTTCCCCGTACTCTGCCTCCGAGGACGACATTC
CCAGCGTGGCCTTCGCTTCTCGGCTCGGGGGCATCCGGGGAGCAGCACCAGGGCTGCTCATGGCTGTCCGGCAGGACCTT
TATTGTTTCCCCTTCAGC

Alignment

ORF - retro_ggor_2026 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.17 %
• Parental protein coverage: 82.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PLTKESIRQKEMESKRLRLLQEEDRRKKIARMGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKV
          P.T...I.Q.EME..RLRLL.EE..RKK.ARMGFNASSMLRKSQLGFLNVT.Y..LA.ELR.SCMERKKV
Retrocopy PVTR-NIPQEEMEAERLRLLEEEAKRKKVARMGFNASSMLRKSQLGFLNVTSYSRLANELRVSCMERKKV

Parental  QIRSMDPSALASDRFNLILADTNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNS
          QIRS.DPS.LASDRFN.ILA.TNSD.LF.VN.V.V.GSKYGII.L..LK.P...V....NLY..NRKV.S
Retrocopy QIRSLDPSSLASDRFNFILASTNSDQLFVVNQVEVEGSKYGIISLRTLKIPSFHVYVLRNLYVPNRKVKS

Parental  VCWASLNHLDSHILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
          .CWASLN.LDSH.LLC..G....P.CA.LLPAS.F...H.....PGMLCSF.IP.AWSCAWSLN..A.NC
Retrocopy LCWASLNQLDSHVLLCFEGITDAPSCAVLLPASRFLSVHTRVNQPGMLCSFQIPEAWSCAWSLNTRAYNC

Parental  FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFH
          FS.GLS..VLLT.V.TGH.QSF.T.SDVLAQQFA..APLLFNGCRSGEIFAIDLRC.N.GKGW.ATRLFH
Retrocopy FSAGLSQQVLLTSVATGHQQSFDTSSDVLAQQFASTAPLLFNGCRSGEIFAIDLRCRNRGKGWRATRLFH

Parental  DSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKHVRQYEGHVNEYAYLPLHVHEEEGILVAVGQDCYTR
          DSAVTSV.ILQ.EQ.LMASDM.GKIKLWDLR.TK.VRQYEGHVNE.AYLPLHVHEEEGI.VAVGQDCYTR
Retrocopy DSAVTSVQILQEEQCLMASDMTGKIKLWDLRATKCVRQYEGHVNESAYLPLHVHEEEGIVVAVGQDCYTR

Parental  IWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRG-APGLLMAVGQDLYCYSYS
          IWSLHDA.LLRTIPSPY.AS..DIPSVAF.SRLGG.RG.APGLLMAV.QDLYC...S
Retrocopy IWSLHDAHLLRTIPSPYSASEDDIPSVAFASRLGGIRGAAPGLLMAVRQDLYCFPFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.05 RPM	15.78 RPM
SRP007412_cerebellum	0.16 RPM	5.04 RPM
SRP007412_heart	0.09 RPM	1.16 RPM
SRP007412_kidney	0.12 RPM	9.98 RPM
SRP007412_liver	0.00 RPM	3.85 RPM
SRP007412_testis	28.39 RPM	10.46 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2026 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2026 has 3 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_101
Pan troglodytes	retro_ptro_46
Macaca mulatta	retro_mmul_152

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000013878	1 retrocopy	retro_cpor_293,
Homo sapiens	ENSG00000119599	2 retrocopies	retro_hsap_101, retro_hsap_92,
Gorilla gorilla	ENSGGOG00000003815	2 retrocopies	retro_ggor_2026 , retro_ggor_2743,
Macaca mulatta	ENSMMUG00000003625	2 retrocopies	retro_mmul_152, retro_mmul_264,
Nomascus leucogenys	ENSNLEG00000002449	2 retrocopies	retro_nleu_1912, retro_nleu_833,
Pan troglodytes	ENSPTRG00000006507	2 retrocopies	retro_ptro_2774, retro_ptro_46,