RetrogeneDB ID: retro_ggor_1781

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 2b:61359542..61359776(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBY1
• Ensembl ID: ENSGGOG00000013226
• Aliases: None
• Description: None

Sequence

>retro_ggor_1781
CAAAGCCAGAAGTTTGAAAATGGCTGGTGGATAGCAGAGACAGCGATTAGTGGAGGTGTGGACCGGAGGGAGGCCCAGTG
CCTTCACAGGCAGAACTAGCAACTGGAGGAAGAGAACAGTCTCTTGCAGCTGAAAGTGGACATCCTGCTGGACATGTTTT
CAGAGACCACTGCTAAATCCCTTTTAATGGAGAAGGAATTGGATGCATGGAAGAGTGTCAGCCAGAGGAGAAAA

Alignment

ORF - retro_ggor_1781 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.79 %
• Parental protein coverage: 61.11 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL
          QS.KFENG.WIAET..SGGVDRRE.Q.L.R.N.QLEEEN.LL.LKVDILLDM.SE.TA.S.LMEKELD..
Retrocopy QSQKFENGWWIAETAISGGVDRREAQCLHRQN*QLEEENSLLQLKVDILLDMFSETTAKSLLMEKELDAW

Parental  R-ISRKRK
          ...S..RK
Retrocopy KSVSQRRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	19.52 RPM
SRP007412_cerebellum	0.00 RPM	18.40 RPM
SRP007412_heart	0.00 RPM	17.39 RPM
SRP007412_kidney	0.00 RPM	25.19 RPM
SRP007412_liver	0.00 RPM	13.24 RPM
SRP007412_testis	0.00 RPM	22.07 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1781 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1781 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_2344
Pan troglodytes	retro_ptro_1716

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001384	2 retrocopies	retro_cfam_1396, retro_cfam_852,
Dasypus novemcinctus	ENSDNOG00000010982	1 retrocopy	retro_dnov_875,
Homo sapiens	ENSG00000100211	1 retrocopy	retro_hsap_2344,
Gorilla gorilla	ENSGGOG00000013226	1 retrocopy	retro_ggor_1781 ,
Myotis lucifugus	ENSMLUG00000003757	2 retrocopies	retro_mluc_1128, retro_mluc_2608,
Mustela putorius furo	ENSMPUG00000013150	1 retrocopy	retro_mputfur_1186,
Nomascus leucogenys	ENSNLEG00000015153	1 retrocopy	retro_nleu_349,
Otolemur garnettii	ENSOGAG00000028533	1 retrocopy	retro_ogar_1072,
Pan troglodytes	ENSPTRG00000014373	1 retrocopy	retro_ptro_1716,
Vicugna pacos	ENSVPAG00000001484	1 retrocopy	retro_vpac_57,