RetrogeneDB ID:

retro_ggor_133

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:15:38536538..38538134(-)
Located in intron of:ENSGGOG00000007653
Retrocopy
information
Ensembl ID:ENSGGOG00000034924
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSGGOG00000011439
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_133
ATGGCGGCAGTGAAGACCCTGAACCCCAAGGCAGAGGTGACTCGAGCGCAGGCGGCGCTGGCGGTTAACATCAGCGCGGC
GCGGGGTCTGCAGGACGTGCTAAGGACCAACCTGGGGCCCAAGGGCACCATGAAGATGCTCGTTTCTGGCGCTGGAGACA
TCAAACTTACTAAAGACGGCAATGTACTGCTTCACGAAATGCAAATTCAACACCCAACAGCTTCTTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCTAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGCCTTCATCCCAGAATAATCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTAAGCAGAGAGATGGACAGGGAAACACTTGTAGATGTGGCCAGAACATCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTAGTGGACTCCATTTTGGCCATTAAAAAGCAAGATGAACCTATTGA
TCTCTTCATGATTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ACGGAGCACGGCATCCTGATATGAAGAAAAGGGTGGAGGATGCATACATCCTCACTTGTAACGTGTCATTAGAGTATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTCGTGAAAGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGCGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATTGACCCCTTTTCCTTACATGCTCTTTCAAAAGAAGGCATAGTCGCTCTGCGCAGAGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTATGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGACTTGTATATGAGTATACATTGGGAGAAGAGAAGTTTACCTTTATTGAGAAATGTAACAACCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTGAGGGATGGTTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCCGTGGAAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCC
CAGTGTAAAGGGCAGGGCACAGCTTGGAGTCCAAGCATTTGCTGATGATGCATTGCTCATTATTCCCAAGGTTCTTGCTC
AGAACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTG
GACCTGAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGGGTAAAGAAACAGCTTCTTCA
CTCCTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGT

ORF - retro_ggor_133 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.87 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ
MAAVKTLNPKAEV.RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ
RetrocopyMAAVKTLNPKAEVTRAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ
ParentalHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVS
HPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVS
RetrocopyHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVS
ParentalREMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMIEIMEMKHKSETDTSLIRGL
REMDRETL.DVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMIEIMEMKHKSETDTSLIRGL
RetrocopyREMDRETLVDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMIEIMEMKHKSETDTSLIRGL
ParentalVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRK
VLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRK
RetrocopyVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRK
ParentalVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDCLGHAGLV
VCGDSDKGFVVINQKGIDPFSL.ALSKEGIVALRRAKRRNMERLTLA.GGVALNSFDDLSPDCLGHAGLV
RetrocopyVCGDSDKGFVVINQKGIDPFSLHALSKEGIVALRRAKRRNMERLTLAYGGVALNSFDDLSPDCLGHAGLV
ParentalYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAE
YEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAE
RetrocopyYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAE
ParentalALIKHKPSVKGRAQLGVQAFA-DALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGEPMVA
ALIKHKPSVKGRAQLGVQAFA.DALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGEPMVA
RetrocopyALIKHKPSVKGRAQLGVQAFADDALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGEPMVA
ParentalAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG
AEVGVWDNY.VKKQLLHSCTVIATNILLVDEIMRAGMSSLKG
RetrocopyAEVGVWDNYWVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 78 .26 RPM
SRP007412_cerebellum 0 .04 RPM 55 .63 RPM
SRP007412_heart 0 .00 RPM 16 .82 RPM
SRP007412_kidney 0 .00 RPM 83 .09 RPM
SRP007412_liver 0 .00 RPM 35 .14 RPM
SRP007412_testis 0 .00 RPM 86 .61 RPM

ChIP-Seq - click to see more details

Gorilla gorilla was not studied using ChIP-Seq data.

EST - click to see more details

Gorilla gorilla was not studied using EST data.

TSS - click to see more details

Gorilla gorilla was not studied using FANTOM5 data.

Lab - click to see more details

retro_ggor_133 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_133 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 19 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000160771 retrocopy
retro_amel_855,
Canis familiaris ENSCAFG000000101491 retrocopy
retro_cfam_431,
Choloepus hoffmanni ENSCHOG000000006543 retrocopies
retro_chof_1183, retro_chof_1193, retro_chof_150,
Callithrix jacchus ENSCJAG000000212792 retrocopies
retro_cjac_1320, retro_cjac_580,
Dipodomys ordii ENSDORG000000012491 retrocopy
retro_dord_617,
Felis catus ENSFCAG000000276542 retrocopies
retro_fcat_1102, retro_fcat_320,
Homo sapiens ENSG000001467312 retrocopies
retro_hsap_2741, retro_hsap_3290,
Gorilla gorilla ENSGGOG00000011439 1 retrocopy
retro_ggor_133 ,
Loxodonta africana ENSLAFG000000127911 retrocopy
retro_lafr_808,
Macaca mulatta ENSMMUG000000152721 retrocopy
retro_mmul_2582,
Monodelphis domestica ENSMODG000000065651 retrocopy
retro_mdom_1330,
Nomascus leucogenys ENSNLEG000000156641 retrocopy
retro_nleu_1355,
Oryctolagus cuniculus ENSOCUG000000176741 retrocopy
retro_ocun_468,
Procavia capensis ENSPCAG000000155321 retrocopy
retro_pcap_263,
Pongo abelii ENSPPYG000000258201 retrocopy
retro_pabe_2719,
Pan troglodytes ENSPTRG000000192062 retrocopies
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG000000014211 retrocopy
retro_pvam_663,
Rattus norvegicus ENSRNOG000000009231 retrocopy
retro_rnor_2226,
Tursiops truncatus ENSTTRG000000151581 retrocopy
retro_ttru_1552,


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