RetrogeneDB ID: retro_fcat_699

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:39390344..39390585(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ELOF1
• Ensembl ID: ENSFCAG00000004926
• Aliases: None
• Description: elongation factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28691]

Sequence

>retro_fcat_699
GGATGCAGAGAGTCAGAACGGAAGTGCCCCTCCAAAAAGATGGAGGCGCCCTAGAGCCCCACTTCACCTGCCCCTCCTGC
AACCACGAGAAGTTTGTGAGGAGAAAATGGACCATGCCAGCAACACTAGGATCATCTCTTGAACGGCATGCCTAGAGGAA
TCCCACAAGCCCATCACATTACCTGTCAGAGGCAGTGGATGTTACAGAGATGAGACAGATGCCTGTCAGGCAGCCAACCA
G

Alignment

ORF - retro_fcat_699 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.79 %
• Parental protein coverage: 98.8 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  GRRKSKRKPPPKKKMT-GTLETQFTCPFCNHEK-SCDVKMDRARNTGVISCTVCLEEFQTPIT-YLSEPV
          G.R.S.RK.P..KKM..G.LE..FTCP.CNHEK..C..KMD.A.NT..IS.T.CLEE...PIT.YLSE.V
Retrocopy GCRESERKCP-SKKME<GALEPHFTCPSCNHEK<VCEEKMDHASNTRIIS*TACLEESHKPIT>YLSEAV

Parental  DV-YSDWIDACEAANQ
          DV.Y.D..DAC.AANQ
Retrocopy DV<YRDETDACQAANQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	6.43 RPM
SRP017611_kidney	0.00 RPM	9.48 RPM
SRP017611_liver	0.00 RPM	2.83 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_699 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_699 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000000064	1 retrocopy	retro_amel_1495,
Cavia porcellus	ENSCPOG00000020359	1 retrocopy	retro_cpor_1091,
Felis catus	ENSFCAG00000004926	1 retrocopy	retro_fcat_699 ,
Loxodonta africana	ENSLAFG00000001534	2 retrocopies	retro_lafr_1217, retro_lafr_771,
Macropus eugenii	ENSMEUG00000012101	1 retrocopy	retro_meug_2078,
Otolemur garnettii	ENSOGAG00000026211	1 retrocopy	retro_ogar_2878,
Ictidomys tridecemlineatus	ENSSTOG00000003687	1 retrocopy	retro_itri_1081,
Tupaia belangeri	ENSTBEG00000004812	1 retrocopy	retro_tbel_2163,
Tursiops truncatus	ENSTTRG00000001807	1 retrocopy	retro_ttru_1611,