RetrogeneDB ID: retro_etel_975

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_194184:2556..2860(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ERH
• Ensembl ID: ENSETEG00000016172
• Aliases: None
• Description: enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447]

Sequence

>retro_etel_975
ATGTCTCACACCGCTTTGCTAGTCCAGCCTACCAAGGGGCCAGAAGCAGAACTTAAGCTGACTGCAAATCTGTGAATGAA
TGCCTGGAAGGCGTTGTAAAACCATGAAGAGCATCAGGAGAGGATGGATCCCAGCAGTCCCGAGGTTACACATGACATCA
GGCAGTTGTTTGAGTTTACTGAGCACCTGGCAGACCTCAGCCGTCTTGTTTCCTGAACTGATACCCAGACATGCCATCCT
TACAACAAAGACTGGATTAGAAAGATCTACACGCCTCTTCTTCGGCAGGGCTCAACCGGCTGGA

Alignment

ORF - retro_etel_975 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.42 %
• Parental protein coverage: 99.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MSHTILLVQPTKRPEG-RTYADYESVNECMEGV-CKM-YEEHLKRMNPNSPSITYDISQLFDFIDDLADL
          MSHT.LLVQPTK.PE..RT.AD..SVNEC.EGV.CK...EEH..RM.P.SP..T.DI.QLF.F...LADL
Retrocopy MSHTALLVQPTKGPEA<RT*ADCKSVNECLEGV<CKT<HEEHQERMDPSSPEVTHDIRQLFEFTEHLADL

Parental  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQ-AQQAG
          S.LV...DTQT..PYNKDWI..KIY..L.RQ.AQ.AG
Retrocopy SRLVS*TDTQTCHPYNKDWIR-KIYTPLLRQ>AQPAG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_975 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 13 parental genes, and 30 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017798	4 retrocopies	retro_btau_1260, retro_btau_438, retro_btau_651, retro_btau_795,
Callithrix jacchus	ENSCJAG00000014940	2 retrocopies	retro_cjac_209, retro_cjac_846,
Equus caballus	ENSECAG00000019178	1 retrocopy	retro_ecab_45,
Erinaceus europaeus	ENSEEUG00000007758	6 retrocopies	retro_eeur_105, retro_eeur_108, retro_eeur_115, retro_eeur_116, retro_eeur_185, retro_eeur_546,
Echinops telfairi	ENSETEG00000016172	5 retrocopies	retro_etel_1122, retro_etel_1451, retro_etel_715, retro_etel_716, retro_etel_975 ,
Homo sapiens	ENSG00000100632	2 retrocopies	retro_hsap_3594, retro_hsap_3799,
Myotis lucifugus	ENSMLUG00000011879	1 retrocopy	retro_mluc_142,
Oryctolagus cuniculus	ENSOCUG00000004636	1 retrocopy	retro_ocun_42,
Ochotona princeps	ENSOPRG00000000086	2 retrocopies	retro_opri_1140, retro_opri_519,
Pongo abelii	ENSPPYG00000005939	2 retrocopies	retro_pabe_2954, retro_pabe_3104,
Sus scrofa	ENSSSCG00000002307	1 retrocopy	retro_sscr_748,
Tursiops truncatus	ENSTTRG00000013963	2 retrocopies	retro_ttru_1671, retro_ttru_614,
Vicugna pacos	ENSVPAG00000006444	1 retrocopy	retro_vpac_423,