RetrogeneDB ID: | retro_dnov_1564 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_235657:1102..1441(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GNPNAT1 | ||
| Ensembl ID: | ENSDNOG00000018802 | ||
| Aliases: | None | ||
| Description: | glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980] |
Retrocopy-Parental alignment summary:
>retro_dnov_1564
ATGCAATCTTTTGAGCACATGAAGAAATCTGGGGATTATTATGTTACTGTTGTGGAAGATGTGACTCTAGGACAGATTGT
TGCTACAGCAACTCTGATAATTGAACATAAATTCATCCATTCCTGTGCTAAGAGAGGAAGAGTAGAAGATGTTGTCGTTA
GTGATGAATGCAGAGGGAAACAGCTTGGCAAATTGTTATTATCAACCCTTACTTTGCTAAGCAAGAAACTGAACTGTTAC
AAGATTACCCTTGAATGTCTACCACAAAATATTGGTTTCTATAAAAAGTTTGGATATACAGTCTCTGAAGAAAACTACAT
GTGCCGGAGGTTTCTAAAG
ORF - retro_dnov_1564 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 93.81 % |
| Parental protein coverage: | 61.41 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MQSFEHMKKSGNFYVTVVEDVTLGQIVAIATLIIEHKFIHSCTKRGRVEDIVVSDECRGKQTGKLLLSTL |
| MQSFEHMKKSG..YVTVVEDVTLGQIVA.ATLIIEHKFIHSC.KRGRVED.VVSDECRGKQ.GKLLLSTL | |
| Retrocopy | MQSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTL |
| Parental | TLLSKKLNCYKITLECLPQNIGFYKKLGYTVSEENYMCRRFLK |
| TLLSKKLNCYKITLECLPQNIGFYKK.GYTVSEENYMCRRFLK | |
| Retrocopy | TLLSKKLNCYKITLECLPQNIGFYKKFGYTVSEENYMCRRFLK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 11 .08 RPM | 6 .42 RPM |
| SRP012922_cerebellum | 7 .42 RPM | 6 .74 RPM |
| SRP012922_heart | 1 .62 RPM | 0 .70 RPM |
| SRP012922_kidney | 5 .75 RPM | 3 .83 RPM |
| SRP012922_liver | 6 .50 RPM | 2 .79 RPM |
| SRP012922_lung | 6 .72 RPM | 4 .89 RPM |
| SRP012922_quadricep_muscle | 2 .42 RPM | 1 .38 RPM |
| SRP012922_spleen | 2 .98 RPM | 1 .03 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1564 was not experimentally validated.