RetrogeneDB ID: retro_chof_38

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_150853:1586..1934(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSCHOG00000009403
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCHOG00000001830
• Aliases: None
• Description: None

Sequence

>retro_chof_38
AATGAAGACCTGGTTTGCTTCAAAGATATCAAACCAGCAGCACCTCATCATTATCTTGTGGTGCCAAAGAAGCACATTAG
AAACTGCAAAGAATTAAAGAAAGATCAAGTAGAACTGGTTGAGAAAATGGTAATTGTTGGAAAAGCCATTCTTGAAAGGA
ATAATTTCACTGACTTCAAAAATACGAGGATGGGTTTCCATATGCCACCATTCTGTTCTATTTCCCATTTGCACCTTCAT
GTTCCGGCACCGGTCACTCAGCTTGGCTTCATATCAAAATTTGTTTATAGAGTCAATTCCTACTGGTTTATCACAGCTGA
TTATTTGATTGATAAACTAAGAACATGA

Alignment

ORF - retro_chof_38 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.26 %
• Parental protein coverage: 68.05 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NEDLVCFKDIKPAAPHHYLVVPKKHIRNCKELKKDQVELVEKMVIVGKAILERNNFTDFKNMRMGFHMPP
          NEDLVCFKDIKPAAPHHYLVVPKKHIRNCKELKKDQVELVEKMVIVGKAILERNNFTDFKN.RMGFHMPP
Retrocopy NEDLVCFKDIKPAAPHHYLVVPKKHIRNCKELKKDQVELVEKMVIVGKAILERNNFTDFKNTRMGFHMPP

Parental  FCSISHLHLHVLAPVTQLGFISKFVYRVNSYWFITADYLIDKLRT
          FCSISHLHLHV.APVTQLGFISKFVYRVNSYWFITADYLIDKLRT
Retrocopy FCSISHLHLHVPAPVTQLGFISKFVYRVNSYWFITADYLIDKLRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_38 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001830	1 retrocopy	retro_chof_38 ,
Callithrix jacchus	ENSCJAG00000003710	1 retrocopy	retro_cjac_3868,
Cavia porcellus	ENSCPOG00000021856	1 retrocopy	retro_cpor_674,
Echinops telfairi	ENSETEG00000007350	1 retrocopy	retro_etel_1567,
Macropus eugenii	ENSMEUG00000007627	1 retrocopy	retro_meug_853,
Mus musculus	ENSMUSG00000019791	1 retrocopy	retro_mmus_1387,