Parental gene:

TCM_028816

Aliases:None
Description:Thioredoxin-dependent peroxidase 1 isoform 2
Organism:Cacao (Theobroma cacao)
Coordinates:6:18460170..18461612(-)


>TCM_028816
ATGACTTGTACCGCGGTCGGTGACACAATTCCCGATGGCACTCTCTCCTATGCTGATGAGGATGATCAGATTCTAAACGT
GTCCGTACACTCCCTTGCTGCCTGTAAACAGGTCATTCTCGTCGGAGTTCCCGGTGCCTTTACACCCACGTGCAGTTTGA
AGCATGTTCCAGGATTCATTGAAAAAGCAGAGGAGCTGAAGTCAAAAGGCATTAGTGAGATTTTCTTAATCAGTGTAAAT
GACCCATATGTGATGAAGGCTTGGGCAAAGTCATATCCCGAAAACAAGCATGTCAAGTTTTTCTCTGATAGCTCTGCAGC
TTACATCAAAACTCTTGGTCTTGACCTTGACGTCTCTGACAGAGGTTTTGGAGTTCGGTCACAAAGGTTTGCTCTCCTGA
TTGATGATCTTAAAGTTAAAGTTGTTAACGTGGAATCTGGTGGCCAGTTCAAAGTTTCCAGCGCTGAAGACATGCTCAAA
TCTCTCTGA

Species Parental gene accession Homology type Retrogenes number
Arabidopsis thaliana AT1G65980 ortholog_one2many 1 retrogene
retro_atha_13,
Arabidopsis lyrata fgenesh2_kg.2__836__AT1G65980.1 ortholog_one2many 1 retrogene
retro_alyr_5,
Glycine max GLYMA07G09240 ortholog_one2many 1 retrogene
retro_gmax_12,
Hordeum vulgare MLOC_12954 ortholog_one2one 1 retrogene
retro_hvul_9,
Populus trichocarpa POPTR_0018s09030 ortholog_one2many 1 retrogene
retro_ptri_12,
Prunus persica PRUPE_ppa012586mg ortholog_one2one 1 retrogene
retro_pper_22,
Sorghum bicolor Sb03g030950 ortholog_one2one 1 retrogene
retro_sbic_22,
Selaginella moellendorffii SELMODRAFT_159225 ortholog_one2many 1 retrogene
retro_smoe_4,
Solanum lycopersicum Solyc07g020860.2 ortholog_one2one 1 retrogene
retro_slyc_41,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tcac_8 52.50 97.53
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Download FASTA sequences of all TCM_028816 retrocopies