Parental gene:

POPTRDRAFT_836228, POPTR_0006s12740

Aliases:None
Description:Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9MTE3]
Organism:Western balsam poplar (Populus trichocarpa)
Coordinates:6:9885953..9890845(+)


>POPTR_0006s12740
ATGTCTAACCAAGCTGAAGCTGAATCCTCCGACTCTAAGGGAACAAAGAGGGATTTTAGTACTGCGATTCTGGAGAGAAA
GAAGGCTCCGAATCGGCTTGTTGTTGATGAGGCTGTAAACGATGATAACTCTGTCGTTTCGCTTCATCCCGAGACCATGG
AGAAGCTCCAGCTCTTTCGGGGTGACACCATCTTAATCAAGGGAAAGAAAAGGAAAGATACTATTTGTATTGCCCTCGCT
GATGACTCATGCGATGAACCAAAGATCAGGATGAACAAGGTTGTGAGGTCGAACCTGAGGGTTAGGCTTGGAGATGTGGT
GTCTGTGCACCAGTGTCCTGATGTCAAGTATGGAAAACGTGTGCACATCCTGCCCATAGATGACACAATTGAAGGGGTCA
CTGGAAATCTCTTTGATGCCTACTTGAAGCCTTATTTCCTGGAGGCATATCGCCCAGTGAGGAAGGGTGATCTCTTCCTT
GTAAGAGGGGGAATGAGAAGTGTGGAGTTCAAAGTTATTGAAACTGATCCACCGGAGTACTGTGTGGTTGCTCCAGACAC
TGAGATCTTCTGTGAGGGAGAGCCTGTGTTAAGGGAGGATGAGAATAGATTAGATGAAGTTGGTTATGATGATGTTGGTG
GTGTTAGAAAACAAATGGCTCAGATTCGGGAGTTAGTGGAGCTTCCATTGAGACACCCACAACTATTCAAATCAATTGGT
GTGAAACCACCGAAAGGTATTCTGCTGTATGGACCTCCTGGTTCTGGGAAGACTCTTATTGCCCGAGCAGTTGCTAATGA
AACTGGTGCTTTCTTCTTCTGTATTAATGGACCTGAAATCATGTCAAAATTGGCTGGAGAGAGTGAGAGCAATCTCAGAA
AAGCGTTTGAGGAAGCAGAGAAGAATGCACCTTCGATTATATTTATCGATGAAATTGATTCGATTGCTCCAAAGCGAGAG
AAGACAAACGGAGAGGTTGAGAGGAGGATTGTATCCCAGCTCTTGACACTCATGGATGGACTAAAATCCCGGGCACATGT
TATTGTCATGGGGGCTACAAATCGACCCAATAGCATTGACCCTGCTCTGAGGAGGTTTGGGAGATTCGATAGGGAAATCG
ATATCGGTGTTCCAGATGAAGTTGGGCGCCTTGAGGTTCTTCGTATTCATACTAAGAACATGAGGCTTGCTGAAGATGTT
GATTTGGAAAGAATTGCCAAGGATACCCATGGTTATGTTGGTGCTGATTTAGCAGCACTTTGCACTGAGGCTGCACTTCA
ATGCATCAGAGAAAAGATGGATGTGATTGATTTGGAAGATGAGACAATAGATGCTGAGATACTCAACTCCATGGCAGTGA
CTGACGAACACTTCAAGACTGCTCTTGGAACAAGCAACCCATCTGCTTTGCGTGAAACAGTTGTCGAAGTTCCTAATGTT
AGTTGGGAAGATATTGGTGGTCTCGAGACTGTTAAGAGAGAGCTGCAGGAGACTGTTCAATATCCAGTGGAGCACCCAGA
GAAATTTGAGAAGTTTGGAATGTCACCATCAAAGGGAGTTCTGTTCTACGGTCCTCCTGGATGTGGGAAAACTCTTCTGG
CTAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTATCAAGGGTCCTGAATTGCTTACAATGTGGTTTGGTGAG
AGTGAGGCCAATGTACGAGAAATTTTTGACAAAGCTCGCCAATCTGCTCCTTGTGTCTTGTTCTTTGATGAACTTGACTC
AATTGCAACTCAGAGAGGAAGCAGTGTGGGAGATGCGGGGGGTGCTGCTGATAGAGTTTTGAACCAGCTTCTGACAGAGA
TGGATGGCATGTCTGCAAAGAAAACTGTTTTCATAATTGGGGCAACTAACAGACCTGACATCATAGACCCTGCCTTATTG
CGTCCAGGGCGTCTTGATCAGTTAATCTATATCCCTCTTCCTGACGAGGAGTCTCGCTTTCAAATTTTCAAATCTTGCTT
GAGGAAATCACCAGTCTCTAAAGATGTTGACCTCACAGCACTTGCCAAGTATACACAGGGTTTCAGTGGTGCTGATATTA
CAGAAATATGCCAGCGTGCCTGCAAATATGCCATAAGAGAGAACATTGAGAAAGATATCGAGAGGGAGAGGAGGCGAAGC
GAGAACCCTGAGGCTATGGAGGAAGATGTTGAGGATGAGGTGTCTGAGATCAAGGCATCACATTTTGAGGAATCCATGAA
ATATGCCCGTCGGAGTGTTAGTGATGCTGACATCCGCAAGTATCAGGCGTTTGCTCAAACACTGCAACAGTCAAGAGGGT
TTGGATCTGAATTCAGGTTTGCTGAAGCTAGCGCCGGGGCAACTGGATCCGATCCGTTTGCAGCTTCTGCTGGCGGGGCT
GATGAAGATGACCTTTATAGCTAA

Species Parental gene accession Homology type Retrogenes number
Brachypodium distachyon BRADI1G74922 ortholog_many2many 1 retrogene
retro_bdis_9,
Zea mays GRMZM2G063060 ortholog_many2many 1 retrogene
retro_zmay_7,
Leersia perrieri LPERR03G03650 ortholog_many2many 1 retrogene
retro_lper_1,
Hordeum vulgare MLOC_74069 ortholog_many2many 2 retrogenes
retro_hvul_38, retro_hvul_40,
Hordeum vulgare MLOC_76416 ortholog_many2many 1 retrogene
retro_hvul_59,
Oryza glaberrima ORGLA06G0255900 ortholog_many2many 1 retrogene
retro_ogla_73,
Prunus persica PRUPE_ppa001552mg ortholog_one2many 1 retrogene
retro_pper_43,
Sorghum bicolor Sb01g020910 ortholog_many2many 1 retrogene
retro_sbic_10,
Sorghum bicolor Sb01g046840 ortholog_many2many 1 retrogene
retro_sbic_42,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptri_3 81.98 97.52
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Download FASTA sequences of all POPTR_0006s12740 retrocopies