Parental gene:

RPL34, ENSVPAG00000005953

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_2403:771816..774834(+)


>ENSVPAG00000005953
ATGGTCCAGCGTTTGACATACCGTCGTAAGCTGTCCTACACAGCCTCTAACAAAACTAGGCTGGCCCGAACCCCTGGAAA
TAGAATTTTTTACCTTTATACCAAAAAAGGGAAAGCACCAAAATCCGCATGTGGGTTGTGCCCAGGCCGACTTCGAGGGG
TTCGCGCTGTGAGACCTAAAGTTCTTATGAGACTGTCTAAAACAAAAAAACATGTCAGTCGGGCTTATGGTGGTTCCATG
TGTGCTAAATGTGTCCGTGACAGGATCAAGCGTGCTTTCCTTATTGAAGAGCAGAAAATCGTTGTGAAAGTATTGAAAGC
ACAAGCACAGAGTCAAAAAGCTAAATAA

Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Macaca mulatta ENSMMUG00000011901 possible_ortholog 1 retrogene
retro_mmul_162,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Pongo abelii ENSPPYG00000014988 ortholog_one2many 18 retrogenes
retro_pabe_1171, retro_pabe_1351, retro_pabe_1609, retro_pabe_1630, retro_pabe_1859, retro_pabe_2338, retro_pabe_2560, retro_pabe_2784, retro_pabe_2931, retro_pabe_3330, retro_pabe_3352, retro_pabe_3375, retro_pabe_3788, retro_pabe_385, retro_pabe_420, retro_pabe_566, retro_pabe_77, retro_pabe_827,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Pteropus vampyrus ENSPVAG00000005914 ortholog_one2one 9 retrogenes
retro_pvam_1078, retro_pvam_1114, retro_pvam_1394, retro_pvam_189, retro_pvam_192, retro_pvam_225, retro_pvam_264, retro_pvam_312, retro_pvam_361,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_84 59.72 60.87
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2. retro_vpac_134 62.75 86.96
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3. retro_vpac_280 84.47 86.09
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4. retro_vpac_309 81.90 99.13
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5. retro_vpac_414 79.41 57.39
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6. retro_vpac_421 78.07 97.39
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7. retro_vpac_430 75.00 60.87
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8. retro_vpac_514 50.83 100.00
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9. retro_vpac_537 80.67 100.00
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Download FASTA sequences of all ENSVPAG00000005953 retrocopies