Parental gene:

SKA1, ENSSSCG00000004518

Aliases:None
Description:spindle and kinetochore associated complex subunit 1 [Source:HGNC Symbol;Acc:28109]
Organism:Pig (Sus scrofa)
Coordinates:1:109665471..109732810(+)


>ENSSSCG00000004518
ATGGCCTTGTCAGATCTGGAACAACTGTGCTCACATATTAATGAAAAAATTGGCAATATTAAAAAAACTCTGTCGTTAAG
AAATTGTGGTCAAGAACCTACCTTGAAGACTATATTAAATAAAATAGGAGATGAGATCATTGTAGTAAATGAACTTCTAA
ATAAATTGGAATTGGAAATTGAGTATCAAGAACAAACCAACAGTTCACTCCAGGAACTCTGTGAATCTCTCGAAGAAGAT
TATAAAGATGTGGAACATCTCAAAGAAAATATTCCTCCCCATTTGCCTCAAGTAACAGTAACCCAGAACGTTGTTAATGG
ATCAGATCTTGACCCTGAAGAACCAGCCAAGGTTGAGGAATCTGCACCCCCAAAGAAGCCCCCCAAAGAACAAAGAAATA
TTAAAGAAATGCTATTTATAACTTCTGACGAGTTTAATGGCATTCCTGCGTACATGAAATCCCGGTTAACCTATTGTCAA
ATTAATGATGTTATTAAAGAAATCAACAAGGCAGTAGTTGGTAAATATAAGATCCTCCATCAACCAAAAAAGTCTATGAA
TTCTGTGGCTAGAAACCTCTATCACAGATTTATCGATGAAGAAACAAAGGAAACCAAAGGCCATTATTTTATAGTGGAGG
CTGACATAAAGGAGTTCACAGCTTTGAAAGTTGACAAGAGGTTTCATGTGATACTGAATATTTTACGACACTGCCGGAGG
CTCTCAGAGGTCCGAGGGGGAGGACTTACCCGATACGTTATAACATGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .13 RPM
SRP014902_testis 0 .71 RPM
SRP018288_heart 0 .42 RPM
SRP018288_kidney 0 .59 RPM
SRP018288_liver 0 .64 RPM
SRP018288_lung 2 .75 RPM
SRP018856_adipose 0 .08 RPM
SRP035408_brain 0 .67 RPM
SRP035408_liver 4 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008555 ortholog_one2one 2 retrogenes
retro_cjac_1103, retro_cjac_875,
Dasypus novemcinctus ENSDNOG00000000190 ortholog_one2one 1 retrogene
retro_dnov_1081,
Loxodonta africana ENSLAFG00000005238 ortholog_one2one 1 retrogene
retro_lafr_849,
Myotis lucifugus ENSMLUG00000013388 ortholog_one2one 1 retrogene
retro_mluc_2127,
Tursiops truncatus ENSTTRG00000015539 ortholog_one2one 1 retrogene
retro_ttru_1083,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_360 78.81 58.82
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Download FASTA sequences of all ENSSSCG00000004518 retrocopies