Parental gene:

SKA1, ENSCJAG00000008555

Aliases:None
Description:spindle and kinetochore associated complex subunit 1 [Source:HGNC Symbol;Acc:28109]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:88338829..88354928(+)


>ENSCJAG00000008555
AGGATGGCCTCAGATCTGGAACTGTTATGCTCTCATGTTAATGAAAAGATTGCCAATATTAAGAAAACCTTGTCATTAAG
AAACTGTGGCCAGGAACCTACCTTGAAGACTATGTTAAATAAAATAGGAGATGAGATCATTGTAGTAAATGAACTTCTAA
ATAAATTGGAATTGGAAATTCAGCATCAAGAACAAACCAACAATTCACTCAAGGAACTCTGTGAATCCCTTGAAGAAGAT
TACAAAGACGTAGAACATCTTAAAGAAAACATTCCTTCCCATTTGCTACAAGTAAGAGTCACCCAGAGATGTGTTAAGGG
ATCAGATCTTGATCCTGAAGAACCAGACAAAGCTGTGGAACCTGAACCCATAAAGAAGCCCCCCAAGGAGCAAAGAAGTA
TTAAGGAAATGCCATTTATAACTTGTGATGAGTTCAATGGTGTGCCTTCGTACATGAAATCCCGCTTAACCTATGGTCAA
ATTAATGATGTTATTAAAGAAATCAACAAGGCAGTAATGAGTAAATATAAAATCCTGTATCAACCAAAAAAGTCTATGAA
TTCTGTGGCCAGAAATCTCTATCACAGATTTATTAATGAAGAAACGAAGGATACCAAAGGTCATTATTTTATAGTGGAAG
CTGACATAAAGGAGTTCACGACTTTGAAAGTTGACAAAAAGTTTCATGTGATACTGAGTATTTTACGACACTGCCGGAGA
CTATCAGAGGTCCGAGGGGGAGGACTTACTCGTTATGTTATAACCTGA

Library Parental gene expression (RPM)
SRP051959_colon 0 .82 RPM
SRP051959_heart 1 .21 RPM
SRP051959_kidney 0 .18 RPM
SRP051959_liver 0 .30 RPM
SRP051959_lung 1 .38 RPM
SRP051959_lymph_node 0 .53 RPM
SRP051959_skeletal_muscle 0 .11 RPM
SRP051959_spleen 2 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000000190 ortholog_one2one 1 retrogene
retro_dnov_1081,
Loxodonta africana ENSLAFG00000005238 ortholog_one2one 1 retrogene
retro_lafr_849,
Myotis lucifugus ENSMLUG00000013388 ortholog_one2one 1 retrogene
retro_mluc_2127,
Sus scrofa ENSSSCG00000004518 ortholog_one2one 1 retrogene
retro_sscr_360,
Tursiops truncatus ENSTTRG00000015539 ortholog_one2one 1 retrogene
retro_ttru_1083,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_875 88.84 90.20
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2. retro_cjac_1103 86.72 99.22
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Download FASTA sequences of all ENSCJAG00000008555 retrocopies