Parental gene:

SNRPF, ENSSSCG00000000895

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162]
Organism:Pig (Sus scrofa)
Coordinates:5:91818172..91826105(-)


>ENSSSCG00000000895
ATGAGTTTGCCTCTCAATCCCAAACCTTTCCTCAATGGGTTAACAGGGAAGCCAGTGATGGTGAAACTTAAGTGGGGAAT
GGAGTACAAAGGCTACCTGGTGTCTGTAGATGGCTATATGAATATGCAGCTTGCAAACACAGAAGAATACATAGATGGAG
CATTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGGGGTGTTGAAGAAGAAGAAGAA
GATGGGGAAATGAGAGAATAG

Library Parental gene expression (RPM)
SRP014902_placenta 18 .05 RPM
SRP014902_testis 40 .74 RPM
SRP018288_heart 14 .75 RPM
SRP018288_kidney 15 .56 RPM
SRP018288_liver 11 .35 RPM
SRP018288_lung 23 .32 RPM
SRP018856_adipose 15 .29 RPM
SRP035408_brain 66 .09 RPM
SRP035408_liver 59 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002166 possible_ortholog 3 retrogenes
retro_amel_1239, retro_amel_42, retro_amel_883,
Bos taurus ENSBTAG00000016271 ortholog_one2one 1 retrogene
retro_btau_765,
Equus caballus ENSECAG00000019817 ortholog_one2one 1 retrogene
retro_ecab_154,
Felis catus ENSFCAG00000029966 possible_ortholog 4 retrogenes
retro_fcat_280, retro_fcat_66, retro_fcat_77, retro_fcat_861,
Homo sapiens ENSG00000139343 ortholog_one2one 3 retrogenes
retro_hsap_125, retro_hsap_2487, retro_hsap_2645,
Gorilla gorilla ENSGGOG00000001127 ortholog_one2one 2 retrogenes
retro_ggor_1549, retro_ggor_225,
Macaca mulatta ENSMMUG00000009302 ortholog_one2one 4 retrogenes
retro_mmul_1521, retro_mmul_361, retro_mmul_550, retro_mmul_893,
Mustela putorius furo ENSMPUG00000007176 ortholog_one2one 3 retrogenes
retro_mputfur_1309, retro_mputfur_377, retro_mputfur_941,
Mus musculus ENSMUSG00000020018 ortholog_one2one 4 retrogenes
retro_mmus_1060, retro_mmus_1197, retro_mmus_2537, retro_mmus_3210,
Nomascus leucogenys ENSNLEG00000005835 ortholog_one2one 3 retrogenes
retro_nleu_2259, retro_nleu_274, retro_nleu_651,
Pongo abelii ENSPPYG00000004847 ortholog_one2one 2 retrogenes
retro_pabe_381, retro_pabe_489,
Pteropus vampyrus ENSPVAG00000009036 ortholog_one2one 1 retrogene
retro_pvam_1170,
Rattus norvegicus ENSRNOG00000005556 ortholog_one2one 4 retrogenes
retro_rnor_1822, retro_rnor_1849, retro_rnor_2926, retro_rnor_444,
Sus scrofa ENSSSCG00000009036 within_species_paralog 2 retrogenes
retro_sscr_474, retro_sscr_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_958 60.98 95.35
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Download FASTA sequences of all ENSSSCG00000000895 retrocopies