Parental gene:

Nucks1, ENSRNOG00000047287

Aliases:Nucks1, Nucks
Description:Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9EPJ0]
Organism:Rat (Rattus norvegicus)
Coordinates:13:53753076..53778581(+)


>ENSRNOG00000047287
ATGTCTCGGCCTGTCAGAAATAGGAAGGTCGTTGATTACTCACAGTTTCAGGAGTCAGATGATGCAGACGAAGATTATGG
AAGAGATTCAGGCCCTCCTGCTAAGAAGATTCGGTCATCTCCCCGAGAGGCTAAAAATAAGAGGCGATCTGGCAAAAATT
CACAAGAAGACAGTGAAGACTCAGAAGAAAAAGATGTGAAGACCAAGAAGGATGATTCTCACTCAGCAGAAGACAGTGAG
GATGAAAAAGATGACCATAAAAGTGTACGCCAGCAGCGGCAGGCAGCATCAAAAGCAGCTTCTAAGCAGAGAGAGATGCT
CTTGGAAGATGTGGGCAGCGAGGAGGAGCCGGAAGAAGATGATGAGGCGCCATTCCAGGAGAAAGATTCTGGCAGCGACG
AAGATTTCCTAATGGAGGACGACGATGATAGTGATTATGGCAGTTCAAAAAAGAAAAACAAAAAGATGGTTAAGAAGTCC
AAACCTGAGAGGAAAGAAAAGAAAATGCCCAAACCCAGACTAAAGGCTACAGTGACACCAAGTCCAGTGAAAGGCAAGGG
GAAAGTGGGTCGCCCCACGGCTTCAAAGACATCAAAGGAAAAAACTCCTTCTCCCAAAGAAGAGGACGAGGAAGCAGAAA
GCCCTCCAGAAAAGAAGACATCTGCAAGCCCCCCACTCGAGAAGTCTGGAGATGAAGGGTCTGAAGATGAAGCGGCATCT
GGGGAAGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 35 .30 RPM
SRP017611_kidney 29 .87 RPM
SRP017611_liver 13 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012950 ortholog_one2one 1 retrogene
retro_amel_339,
Bos taurus ENSBTAG00000008001 ortholog_one2one 1 retrogene
retro_btau_541,
Choloepus hoffmanni ENSCHOG00000001855 ortholog_one2one 1 retrogene
retro_chof_437,
Dasypus novemcinctus ENSDNOG00000017212 ortholog_one2many 2 retrogenes
retro_dnov_348, retro_dnov_6,
Dipodomys ordii ENSDORG00000003183 ortholog_one2one 1 retrogene
retro_dord_688,
Homo sapiens ENSG00000069275 ortholog_one2one 1 retrogene
retro_hsap_521,
Gorilla gorilla ENSGGOG00000026655 ortholog_one2one 1 retrogene
retro_ggor_480,
Macropus eugenii ENSMEUG00000007829 ortholog_one2one 2 retrogenes
retro_meug_2015, retro_meug_372,
Macaca mulatta ENSMMUG00000005645 ortholog_one2one 1 retrogene
retro_mmul_422,
Monodelphis domestica ENSMODG00000001832 ortholog_one2many 1 retrogene
retro_mdom_980,
Nomascus leucogenys ENSNLEG00000014564 ortholog_one2one 1 retrogene
retro_nleu_2576,
Pan troglodytes ENSPTRG00000001904 ortholog_one2one 1 retrogene
retro_ptro_389,
Tupaia belangeri ENSTBEG00000015641 ortholog_one2one 1 retrogene
retro_tbel_2591,
Tarsius syrichta ENSTSYG00000000910 ortholog_one2one 1 retrogene
retro_tsyr_987,
Vicugna pacos ENSVPAG00000003751 ortholog_one2one 1 retrogene
retro_vpac_313,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2337 96.62 60.91
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2. retro_rnor_2338 96.62 60.91
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Download FASTA sequences of all ENSRNOG00000047287 retrocopies