Parental gene:

Cct3, ENSRNOG00000019090

Aliases:None
Description:T-complex protein 1 subunit gamma [Source:UniProtKB/Swiss-Prot;Acc:Q6P502]
Organism:Rat (Rattus norvegicus)
Coordinates:2:207072067..207096552(+)


>ENSRNOG00000019090
ATGATGGGCCACCGTCCAGTGCTCGTGCTCAGTCAGAATACAAAGCGTGAGTCTGGAAGAAAAGTTCAATCTGGAAATAT
CAATGCTGCAAAGACAATTGCAGACATCATCCGGACCTGTTTGGGACCTAAATCTATGATGAAGATGCTTTTGGATCCAA
TGGGAGGCATCGTGATGACCAATGATGGTAATGCCATTCTTCGAGAGATTCAAGTCCAGCATCCCGCAGCAAAATCCATG
ATTGAAATTAGCAGGACCCAGGATGAAGAGGTTGGAGATGGGACCACATCAGTAATTATTCTTGCTGGAGAAATGCTGTC
TGTGGCTGAGCACTTCCTAGAGCAGCAGATGCACCCAACAGTGGTGATCAGTGCTTACCGCATGGCACTGGATGATATGG
TCAGCACTCTGAAGAAAATCAGTACCCCTGTTGATGTCAATAACCGTGATATGATGTTGAACATCATCAATAGCTCTATT
ACTACAAAAGTCATCAGTCGGTGGTCCTCTTTGGCATGCAACATTGCACTGGATGCTGTTAAGACTGTTCAGTTTGAAGA
GAATGGCAGAAAGGAAATTGATATCAAGAAGTATGCAAGGGTGGAAAAGATACCCGGGGGCATCATTGAAGACTCGTGTG
TCTTACGTGGAGTTATGATCAACAAGGATGTGACCCATCCAAGAATGCGCCGCTATATTAAGAATCCTCGAATTGTTCTA
CTGGATTCTTCTCTGGAGTACAAGAAAGGAGAAAGCCAGACTGACATTGAGATTACACGAGAGGAGGATTTCACCCGCAT
CCTGCAAATGGAAGAAGAGTACATCCAGCAGTTGTGTGAGGATATTATCCAGCTGAAACCTGACGTAGTCATCACAGAAA
AGGGCATCTCGGATTTAGCTCAGCACTACCTCATGCGGGCCAATGTCACAGCCATTCGTAGAGTCCGGAAAACAGACAAT
AATCGCATTGCTAGAGCCTGTGGGGCACGGATAGTCAGCCGACCCGAGGAACTGAGAGAAGATGATGTTGGTACAGGAGC
AGGCTTATTGGAAATCAAGAAGATTGGAGATGAGTACTTCACATTCATCACTGACTGCAAAGACCCAAAGGCCTGCACCA
TTCTTCTTAGAGGAGCCAGCAAAGAGATACTATCGGAAGTAGAACGCAACCTCCAGGATGCCATGCAAGTGTGCCGCAAT
GTTCTCCTGGACCCTCAGCTGGTGCCTGGTGGTGGAGCCTCTGAGATGGCTGTGGCCCATGCCTTGACAGAAAAATCTAA
GGCCATGACTGGTGTGGAACAATGGCCATATAGGGCTGTGGCCCAGGCTTTAGAGGTCATCCCTCGGACCTTGATCCAGA
ACTGTGGGGCCAGTACCATTCGTCTGCTTACCTCCCTTCGGGCCAAGCACACACAGGAGAATTGTGAGACCTGGGGTGTG
AATGGTGAGACTGGTACCTTAGTGGACATGAAAGAGCTGGGTATTTGGGAGCCATTGGCTGTGAAGCTACAAACATACAA
AACAGCAGTGGAGACTGCAGTTCTGCTTCTGCGGATTGATGACATTGTCTCTGGCCACAAGAAGAAGGGTGATGACCAGA
ACCGGCAAACCGGTGCTCCAGATGCTGGCCAGGAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 95 .33 RPM
SRP017611_kidney 126 .24 RPM
SRP017611_liver 62 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005776 ortholog_one2many 1 retrogene
retro_cjac_1243,
Cavia porcellus ENSCPOG00000009131 ortholog_one2many 1 retrogene
retro_cpor_813,
Mus musculus ENSMUSG00000001416 ortholog_one2many 2 retrogenes
retro_mmus_2352, retro_mmus_824,
Otolemur garnettii ENSOGAG00000008967 ortholog_one2many 1 retrogene
retro_ogar_2017,
Ictidomys tridecemlineatus ENSSTOG00000001798 ortholog_one2many 1 retrogene
retro_itri_788,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1450 89.89 50.83
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2. retro_rnor_2823 75.15 61.65
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Download FASTA sequences of all ENSRNOG00000019090 retrocopies