Parental gene:

Nudc, ENSRNOG00000007399

Aliases:Nudc, Silg92, c15
Description:Nuclear migration protein nudC [Source:UniProtKB/Swiss-Prot;Acc:Q63525]
Organism:Rat (Rattus norvegicus)
Coordinates:5:155443981..155457375(-)


>ENSRNOG00000007399
ATGGGAGGGGAGCAGGAGGAGGAGCGCTTCGACGGCATGCTGCTGGCCATGGCGCAGCAGCACGAGGGCGGCGTGCAGGA
GCTTGTGAACACCTTCTTCAGCTTCCTTCGACGCAAAACAGACTTTTTCATTGGAGGAGAAGAGGGGATGGCAGAGAAGC
TCATCACACAGACTTTTAACCACCACAACCAGCTGGCACAGAAGGCCAGGAGAGAGAAGCGAGCTCGGCAGGAGACAGAG
CGTCGGGAGAAGGCAGAGCGGGCAGCCAGGCTGGCCAAGGAGGCCAAGGCAGAGACTCCCGGGCCACAGATCAAGGAACT
GACTGATGAGGAGGCAGAGAGACTGCAGCTGGAGATTGACCAGAAAAAGGATGCAGAGAACCATGAGGTGCAGCTTAAGA
ACGGCAGTCTTGACTCTCCAGGGAAGCAGGATGCTGAGGAAGAGGAAGACGAGGAAGACGAGAAGGACAAAGGAAAGCTG
AAACCCAACCTAGGCAATGGGGCTGACCTGCCCAACTACCGCTGGACCCAGACCCTGTCAGAGCTGGATCTGGCAGTGCC
CTTCCGAGTCAGCTTCCGGCTGAAGGGAAAGGATGTGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGCCTCAAAG
GACAGGCACCAGTGATTGATGGAGAGCTCTACAATGAAGTAAAGGTGGAGGAGAGCTCGTGGCTCATCGAGGATGGCAAG
GTGGTGACAGTGCATCTGGAGAAGATCAATAAGATGGAGTGGTGGAACCGCTTGGTTACCAGTGACCCCGAAATCAATAC
CAAGAAGATTAACCCTGAGAACTCCAAGCTCTCAGACCTGGACAGTGAGACTCGCAGCATGGTGGAAAAAATGATGTATG
ACCAGAGGCAGAAGTCCATGGGCTTGCCCACCTCTGATGAGCAGAAGAAACAGGAAATCCTGAAGAAGTTCATGGATCAG
CACCCAGAGATGGATTTCTCCAAGGCCAAATTCAACTAG

Library Parental gene expression (RPM)
SRP017611_brain 7 .48 RPM
SRP017611_kidney 4 .75 RPM
SRP017611_liver 3 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Erinaceus europaeus ENSEEUG00000001291 ortholog_one2many 1 retrogene
retro_eeur_526,
Homo sapiens ENSG00000090273 ortholog_one2many 2 retrogenes
retro_hsap_2168, retro_hsap_2183,
Gorilla gorilla ENSGGOG00000015314 ortholog_one2many 2 retrogenes
retro_ggor_1720, retro_ggor_1730,
Microcebus murinus ENSMICG00000015671 ortholog_one2many 1 retrogene
retro_mmur_457,
Mus musculus ENSMUSG00000028851 ortholog_one2many 1 retrogene
retro_mmus_3181,
Nomascus leucogenys ENSNLEG00000009404 ortholog_one2many 2 retrogenes
retro_nleu_2545, retro_nleu_312,
Pongo abelii ENSPPYG00000001673 ortholog_one2many 2 retrogenes
retro_pabe_2055, retro_pabe_2064,
Pan troglodytes ENSPTRG00000000395 ortholog_one2many 2 retrogenes
retro_ptro_1655, retro_ptro_1661,
Pteropus vampyrus ENSPVAG00000004408 ortholog_one2many 1 retrogene
retro_pvam_434,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2009 90.23 79.82
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2. retro_rnor_2108 90.69 100.00
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Download FASTA sequences of all ENSRNOG00000007399 retrocopies