Parental gene:

NUDC, ENSPTRG00000000395

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:26924005..26949440(+)


>ENSPTRG00000000395
ATGGGCGGAGAGCAGGAGGAGGAGCGGTTCGACGGCATGTTGCTGGCCATGGCTCAGCAGCACGAGGGCGGCGTGCAGGA
GCTTGTGAACACCTTCTTCAGCTTCCTTCGACGCAAAACAGACTTTTTCATTGGAGGAGAAGAAGGGATGGCAGAGAAGC
TTATCACACAGACTTTCAGCCACCACAATCAGCTGGCACAGAAGACCCGGCGGGAGAAGAGAGCCCGGCAGGAGGCCGAG
CGGCGGGAGAAGGCGGAGCGGGCAGCCAGACTGGCCAAGGAAGCCAAGTCAGAGACCTCAGGGCCCCAGATCAAGGAGCT
AACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAAAAAGGATGCAGAGAATCATGAGGCCCAGCTCAAGA
ACGGCAGCCTTGACTCCCCAGGGAAGCAGGAGACTGAGGAAGATGAGGAGGAGGAAGATGAGAAGGACAAAGGAAAACTG
AAGCCCAACCTAGGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGACCTGGCGGTCCC
TTTCTGTGTGAACTTCCGGCTGAAAGGGAAGGACGTGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGG
GGCAGCCAGCGATCATCGATGGGGAGCTCTACAATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAG
GTGGTGACTGTGCATCTGGAGAAGATCAATAAGATGGAGTGGTGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACAC
CAAGAAGATTAACCCTGAGAATTCCAAGCTGTCGGACCTGGACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATG
ACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAACAGGAGATTCTGAAGAAGTTCATGGATCAA
CATCCGGAGATGGATTTTTCCAAGGCTAAATTCAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 159 .28 RPM
SRP007412_cerebellum 149 .92 RPM
SRP007412_heart 61 .24 RPM
SRP007412_kidney 98 .30 RPM
SRP007412_liver 149 .37 RPM
SRP007412_testis 133 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Erinaceus europaeus ENSEEUG00000001291 ortholog_one2one 1 retrogene
retro_eeur_526,
Homo sapiens ENSG00000090273 ortholog_one2one 2 retrogenes
retro_hsap_2168, retro_hsap_2183,
Gorilla gorilla ENSGGOG00000015314 ortholog_one2one 2 retrogenes
retro_ggor_1720, retro_ggor_1730,
Microcebus murinus ENSMICG00000015671 ortholog_one2one 1 retrogene
retro_mmur_457,
Mus musculus ENSMUSG00000028851 ortholog_one2one 1 retrogene
retro_mmus_3181,
Nomascus leucogenys ENSNLEG00000009404 ortholog_one2one 2 retrogenes
retro_nleu_2545, retro_nleu_312,
Pongo abelii ENSPPYG00000001673 ortholog_one2one 2 retrogenes
retro_pabe_2055, retro_pabe_2064,
Pteropus vampyrus ENSPVAG00000004408 ortholog_one2one 1 retrogene
retro_pvam_434,
Rattus norvegicus ENSRNOG00000007399 ortholog_one2many 2 retrogenes
retro_rnor_2009, retro_rnor_2108,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1655 80.46 78.31
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2. retro_ptro_1661 87.82 71.39
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Download FASTA sequences of all ENSPTRG00000000395 retrocopies