Parental gene:

CHCHD3, ENSPTRG00000019711

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:134279026..134577314(-)


>ENSPTRG00000019711
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCTGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATCTAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGATCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGATATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAAAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .14 RPM
SRP007412_cerebellum 13 .19 RPM
SRP007412_heart 62 .43 RPM
SRP007412_kidney 38 .42 RPM
SRP007412_liver 25 .14 RPM
SRP007412_testis 13 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001312 ortholog_one2one 1 retrogene
retro_cfam_374,
Dasypus novemcinctus ENSDNOG00000004942 ortholog_one2one 1 retrogene
retro_dnov_2559,
Homo sapiens ENSG00000106554 ortholog_one2one 3 retrogenes
retro_hsap_358, retro_hsap_3759, retro_hsap_542,
Macaca mulatta ENSMMUG00000001671 ortholog_one2many 1 retrogene
retro_mmul_14,
Mus musculus ENSMUSG00000053768 ortholog_one2one 1 retrogene
retro_mmus_3452,
Nomascus leucogenys ENSNLEG00000012967 ortholog_one2one 3 retrogenes
retro_nleu_168, retro_nleu_716, retro_nleu_904,
Oryctolagus cuniculus ENSOCUG00000014032 ortholog_one2one 1 retrogene
retro_ocun_801,
Pongo abelii ENSPPYG00000025827 ortholog_one2one 5 retrogenes
retro_pabe_2492, retro_pabe_3161, retro_pabe_345, retro_pabe_411, retro_pabe_501,
Rattus norvegicus ENSRNOG00000013211 ortholog_one2one 1 retrogene
retro_rnor_2874,
Sorex araneus ENSSARG00000012111 ortholog_one2one 1 retrogene
retro_sara_592,
Ictidomys tridecemlineatus ENSSTOG00000022282 ortholog_one2one 1 retrogene
retro_itri_1301,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_282 96.05 100.00
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2. retro_ptro_407 79.39 98.68
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3. retro_ptro_701 53.17 54.63
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4. retro_ptro_2550 61.72 55.07
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Download FASTA sequences of all ENSPTRG00000019711 retrocopies