Parental gene:

PDCD2, ENSPTRG00000018828

Aliases:None
Description:programmed cell death 2 [Source:HGNC Symbol;Acc:8762]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:172550315..172559299(-)


>ENSPTRG00000018828
GGGGCCAGACCTGTGGAGCTGGGCTTCGCCGAGTCGGCGCCGGCGTGGCGACTGCCAGCGAGCAGTCCCACAAGGGGGGG
GCCGGGCCGGCCGGCATGGCTGGGCGCGGCCGGGCTGCCGGGGCCCCAGGCCCTGGCCTGCGAGCTGTGCGGCCGCCCGC
TCTCCTTCCTGCTGCAGGTGTATGCGCCGCTGCCTGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCTCTTCTGCTGC
CGCGAGCAGCCGTGCTGTGCCGGCCTGCGGGTTTTTAGGAATCAACTACCCAGGAAAAACGATTTTTACTCATATGAGCC
ACCTTCTGAGAATCCTCCCCCAGAAACAGGAGAATCAGTGTGTCTCCAGCTTAAGTCTGGTGCTCATCTCTGCAGGGTTT
GTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCACAAAGCATATTACTGCAGCAAGGAGCATCAGACCCTAGACTGG
AGATTGGGACATAAGCAGGCTTGTGCACAACCAGATCATCTGGACCATATAATTCCAGACCACAACTTCCTTTTTCCAGA
ATTTGAAATTGTAATAGAAACAGAAGATGAGATTATGCCTGAGGTTGTGGAAAAGGAAGATTACTCAGAGATTATAGGGA
GCATGGGTGAAGCACTTGAGGAAGAACTGGATTCCATGGCAAAACATGAATCCAGGGAAGATAAAATTTTTCAGAAGTTT
AAAACTCAGATAGCCCTTGAACCAGAACAGATTCTTAGATATGGCAGAGGTATTGCCCCCATCTGGATTTCTGGTGAAAA
TATTCCTCAAGAAAAGGATATTCCAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATTCCAGGTCATGCCTCAGCTCC
TAAACTACCTGAAGGCTGACAGACTGGGCAAGAGCATTGACTGGGGCATCCTGGCTGTCTTCACCTGTGCTGAGAGCTGC
AGCTTAGGTACTGGCTATACAGAAGAATTTGTGTGGAAGCAGGATGTAACAGATACACCGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 7 .29 RPM
SRP007412_cerebellum 6 .35 RPM
SRP007412_heart 5 .10 RPM
SRP007412_kidney 10 .46 RPM
SRP007412_liver 4 .68 RPM
SRP007412_testis 11 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017075 ortholog_one2one 2 retrogenes
retro_amel_1329, retro_amel_1404,
Callithrix jacchus ENSCJAG00000020634 ortholog_one2many 1 retrogene
retro_cjac_3946,
Equus caballus ENSECAG00000016819 ortholog_one2one 1 retrogene
retro_ecab_533,
Felis catus ENSFCAG00000007037 ortholog_one2one 2 retrogenes
retro_fcat_305, retro_fcat_749,
Homo sapiens ENSG00000071994 ortholog_one2one 1 retrogene
retro_hsap_4305,
Gorilla gorilla ENSGGOG00000028229 ortholog_one2one 2 retrogenes
retro_ggor_2876, retro_ggor_899,
Microcebus murinus ENSMICG00000007474 ortholog_one2one 1 retrogene
retro_mmur_108,
Macaca mulatta ENSMMUG00000019916 ortholog_one2many 1 retrogene
retro_mmul_1137,
Mustela putorius furo ENSMPUG00000007227 ortholog_one2one 2 retrogenes
retro_mputfur_621, retro_mputfur_707,
Nomascus leucogenys ENSNLEG00000000295 ortholog_one2one 2 retrogenes
retro_nleu_1458, retro_nleu_2633,
Otolemur garnettii ENSOGAG00000014002 ortholog_one2one 2 retrogenes
retro_ogar_2090, retro_ogar_2288,
Pongo abelii ENSPPYG00000017193 ortholog_one2many 2 retrogenes
retro_pabe_3505, retro_pabe_958,
Pteropus vampyrus ENSPVAG00000010822 ortholog_one2one 1 retrogene
retro_pvam_1150,
Sus scrofa ENSSSCG00000025312 ortholog_one2many 2 retrogenes
retro_sscr_303, retro_sscr_450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_788 85.55 50.29
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2. retro_ptro_2915 83.28 92.65
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Download FASTA sequences of all ENSPTRG00000018828 retrocopies