Parental gene:

PDCD2, ENSECAG00000016819

Aliases:None
Description:programmed cell death 2 [Source:HGNC Symbol;Acc:8762]
Organism:Horse (Equus caballus)
Coordinates:31:10295759..10300556(-)


>ENSECAG00000016819
TGGCCTTCCCTGCTGCAGCTCTACGCGACGCTGACCGGCCGCGCCGACGCCTTCCACCGCGGCCTCATCCTCTTCTGCTG
CCGCGCGCCGCCGTGCTGCGCGGGCCTGCGGGTTTTTAGAAATCAGCTACCCAGGAAAAATGACTTTTACTCGTATGAGC
CGCCCTCTGAGGAGCCGCCCGCGGCGACAGGAGACCCCGTGTGCCTGCAGCTCAAGTCCGGGGCTCGTCTCTGCAGGGTG
TGCGGCTGTTTAGGCCCCAAAACGTGCTCGCGGTGTCACAGGGCACATTACTGCAGTAAGGAGCATCAGACTCTCGACTG
GAGGTCGGGGCATAAGCAGGCTTGTACGCAAGCAGATAATTTGGACAATACAGTTCCAGACCACAACTTCCTTTTTCCAG
AATTTGAAATTGTAATAGAAACAGAAGATGAGATTACGCCTGAAGTTGTAGAAAAAGAGGAAGAATCAGAGATTATAGGG
AGCATGGGTGAAGCACCTGAGGAAGAATTGGATTCCATGGCAAAACATGAATCCAGGGAAGATAAAGTTTTCCAGAAGTT
TAAAACTAAAGTAGCCCTTGAACCAGAACAGATTCTCAGATATGGCAGAGGGACTGCTCCCATCTGGATCTCTGCTGAAA
ATATCCCTCAAGAGGAGGATGTTCCAGATTGCCCCTGTGGTGCCAAGAGAATATTTGAATTCCAGGTCATGCCACAGCTG
CTCAACTACCTAAAGGCCGACAGACTGGGCAGGAGCGTCGACTGGGGGGTCCTGGCTGTCTTCACCTGTGCTGAAAGCTG
TAGGCTGGGCACTGGCTATGCAGAAGAGTTTGTTTGGAAGCAAGATATAACAGATACACCCTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 12 .16 RPM
SRP021940_cerebellum 9 .35 RPM
SRP021940_embryo 17 .82 RPM
SRP021940_placental_villous 9 .81 RPM
SRP021940_synovial_membrane 10 .46 RPM
SRP021940_testis 29 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017075 ortholog_one2one 2 retrogenes
retro_amel_1329, retro_amel_1404,
Callithrix jacchus ENSCJAG00000020634 ortholog_one2many 1 retrogene
retro_cjac_3946,
Felis catus ENSFCAG00000007037 ortholog_one2one 2 retrogenes
retro_fcat_305, retro_fcat_749,
Homo sapiens ENSG00000071994 ortholog_one2one 1 retrogene
retro_hsap_4305,
Gorilla gorilla ENSGGOG00000028229 ortholog_one2one 2 retrogenes
retro_ggor_2876, retro_ggor_899,
Microcebus murinus ENSMICG00000007474 ortholog_one2one 1 retrogene
retro_mmur_108,
Macaca mulatta ENSMMUG00000019916 ortholog_one2many 1 retrogene
retro_mmul_1137,
Mustela putorius furo ENSMPUG00000007227 ortholog_one2one 2 retrogenes
retro_mputfur_621, retro_mputfur_707,
Nomascus leucogenys ENSNLEG00000000295 ortholog_one2one 2 retrogenes
retro_nleu_1458, retro_nleu_2633,
Otolemur garnettii ENSOGAG00000014002 ortholog_one2one 2 retrogenes
retro_ogar_2090, retro_ogar_2288,
Pongo abelii ENSPPYG00000017193 ortholog_one2many 2 retrogenes
retro_pabe_3505, retro_pabe_958,
Pan troglodytes ENSPTRG00000018828 ortholog_one2one 2 retrogenes
retro_ptro_2915, retro_ptro_788,
Pteropus vampyrus ENSPVAG00000010822 ortholog_one2one 1 retrogene
retro_pvam_1150,
Sus scrofa ENSSSCG00000025312 ortholog_one2many 2 retrogenes
retro_sscr_303, retro_sscr_450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_533 64.41 61.32
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Download FASTA sequences of all ENSECAG00000016819 retrocopies