Parental gene:

LSM2, ENSPTRG00000017986

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:32079261..32089715(-)


>ENSPTRG00000017986
ATGCTCTTCTATTCTTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTAAAGAATGACCTGAGCATCTGTGG
AACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAGTGTCACAGACCCTGAGAAATACCCTCACA
TGTTATCAGTGAAGAACTGCTTCATTCGGGGCTCAGTGGTCCGATACGTGCAGCTGCCAGCAGATGAGGTCGACACACAG
TTGCTACAGGATGCGGCAAGGAAGGAAGCCCTGCAGCAGAAACAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .44 RPM
SRP007412_cerebellum 13 .41 RPM
SRP007412_heart 7 .72 RPM
SRP007412_kidney 15 .53 RPM
SRP007412_liver 8 .74 RPM
SRP007412_testis 9 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002601 ortholog_one2one 2 retrogenes
retro_cjac_1828, retro_cjac_2088,
Felis catus ENSFCAG00000004511 ortholog_one2one 1 retrogene
retro_fcat_309,
Macaca mulatta ENSMMUG00000006832 ortholog_one2one 3 retrogenes
retro_mmul_1389, retro_mmul_1875, retro_mmul_2099,
Mus musculus ENSMUSG00000007050 ortholog_one2one 1 retrogene
retro_mmus_931,
Nomascus leucogenys ENSNLEG00000006371 ortholog_one2one 1 retrogene
retro_nleu_960,
Ochotona princeps ENSOPRG00000003668 ortholog_one2one 2 retrogenes
retro_opri_250, retro_opri_917,
Pongo abelii ENSPPYG00000016461 ortholog_one2one 1 retrogene
retro_pabe_2765,
Rattus norvegicus ENSRNOG00000048725 ortholog_one2one 1 retrogene
retro_rnor_1463,
Ictidomys tridecemlineatus ENSSTOG00000013144 ortholog_one2one 1 retrogene
retro_itri_189,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1349 81.67 62.11
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2. retro_ptro_2063 80.36 56.84
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3. retro_ptro_2284 88.42 100.00
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Download FASTA sequences of all ENSPTRG00000017986 retrocopies