Parental gene: | PPP4R2, ENSPTRG00000015108 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 3:74313405..74384060(+) |
>ENSPTRG00000015108
ATGGACGTCGAGAGGCTCCAGGAGGCGCTGAAAGATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCA
GTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAATGATTCAGTGGTCCCAATTTAAAGGCTATTTTATTTTCAAACTGG
AGAAAGTGATGGATGATTTCAGAACTTCAGCTCCTGAGCCAAGAGGTCCTCCCAACCCTAATGTCGAATATATTCCCTTT
GATGAAATGAAGGAAAGAATACTGAAAATTGTCACTGGATTTAATGGTATCCCTTTTACTATTCAGCGACTATGTGAATT
GTTAACAGATCCAAGGAGAAACTATACAGGAACCGATAAATTTCTCAGAGGAGTAGAAAAGAATGTGATGGTTGTTAGCT
GTGTTTATCCTTCTTCAGAGAAAAACAATTCCAATAGTTTAAATCGAATGAATGGTGTTATGTTTCCTGGAAATTCACCA
AGCTATACTGAGAGGTCTAATATAAATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTTCTTTGTCAGCCCC
CATGACAACAAATGGGTTGCCTGAGAGCACAGAGAGCAAAGAGGCAAATTTGCAGCAAAATGAGGAGAAAAATCACAGTG
ACTCTTCGACATCTGAATCAGAAGTTTCCTCAGTGAGCCCTTTGAAAAATAAACATCCAGATGAAGATGCTGTGGAAGCT
GAGGGGCATGAGGTAAAAAGACTCAGGTTTGACAAAGAAGGTGAAGTCAGAGAAACAGCCAGTCAAACGACTTCCAGCGA
AATTTCTTCAGTTATGGTAGGAGAAACAGAAGCATCATCTTCATCTCAGGATAAAGACAAAGATAGCCATTGTACCCGGC
AGCACTGTACAGAAGAGGATGAAGAAGAGGATGAAGAGGAAGAAGAAGAGTCTTTTATGACATCAAGAGAAATGATCCCA
GAAAGAAAAAATCAAGAAAAAGAATCTGATGATGCCTTAACTGTGAATGAAGAGACTTCTGAGGAAAATAATCAAATGGA
GGAATCTGATGTGTCTCAAGCTGAGAAAGATTTGCTACATTCTGAAGGTAGTGAAAACGAAGGCCCTGTAAGTAGTAGTT
CTTCTGACTGCCGTGAAACAGAAGAATTAGTAGGATCCAATTCCAGTAAAACTGGAGAGATTCTTTCAGAATCATCCATG
GAAAATGATGACGAAGCCACAGAAGTCACCGATGAACCAATGGAACAAGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .16 RPM |
| SRP007412_cerebellum | 19 .97 RPM |
| SRP007412_heart | 29 .79 RPM |
| SRP007412_kidney | 24 .50 RPM |
| SRP007412_liver | 21 .54 RPM |
| SRP007412_testis | 59 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007954 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000019946 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000163605 | ortholog_one2one | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000000513 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016959 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000052144 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006235 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1855 | 90.31 | 61.87 | Please wait, loading  |
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| 2. | retro_ptro_1856 | 89.96 | 61.87 | Please wait, loading |
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| 3. | retro_ptro_2121 | 90.35 | 62.11 | Please wait, loading |
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| 4. | retro_ptro_2220 | 90.00 | 62.11 | Please wait, loading |
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| 5. | retro_ptro_2974 | 89.58 | 61.87 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000015108 retrocopies