Parental gene:

SNX5, ENSPTRG00000013278

Aliases:None
Description:Sorting nexin 5 [Source:UniProtKB/TrEMBL;Acc:K7BDP9]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:18003688..18030411(-)


>ENSPTRG00000013278
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGGACCTGAATGT
TGATCCCTCGCTTCAGATTGACATACCTGATGCGCTCAGTGAGAGAGACAAAGTCAAATTTACAGTGCACACAAAGACCA
CACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAAGACTTTGTGTGGCTACATGACACTCTTATT
GAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTCCTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCA
GAAACTGGGAGAAGGTGAAGGGTCTATGACCAAAGAAGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCG
CTGTGTTTAAGAAGACTGTGTCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGATCGC
AACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATACTAAAGAGATGTTTGGTGGCTTCTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACTGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGA
ACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGACCAGATCTCATAAAAATGTT
GCCGATGACTATATCCACACCGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCCCACAGTCATCAAAAAGTACCTATT
GAAGGTTGCTGAGCTATTTGAAAAACTAAGGAAAGTAGAGGGTCGAGTTTCATCAGATGAAGATTTGAAGCTAACAGAGC
TCCTCCGATACTACATGCTCAACATTGAAGCTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAG
AACTCAAACAAAGCTCTGGATAAGGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTG
CCAGAAATTTGAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAGTGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTGTATTGACTTG
TTCAAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .62 RPM
SRP007412_cerebellum 15 .41 RPM
SRP007412_heart 16 .15 RPM
SRP007412_kidney 76 .81 RPM
SRP007412_liver 19 .74 RPM
SRP007412_testis 19 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010128 ortholog_one2one 2 retrogenes
retro_chof_1478, retro_chof_2166,
Callithrix jacchus ENSCJAG00000004947 ortholog_one2one 2 retrogenes
retro_cjac_2192, retro_cjac_3243,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000008953 ortholog_one2one 1 retrogene
retro_ggor_829,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000011476 ortholog_one2one 2 retrogenes
retro_mmul_1746, retro_mmul_832,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Oryctolagus cuniculus ENSOCUG00000017072 ortholog_one2one 1 retrogene
retro_ocun_1323,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000006253 within_species_paralog 1 retrogene
retro_ptro_1362,
Sus scrofa ENSSSCG00000007088 ortholog_one2one 1 retrogene
retro_sscr_593,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_717 87.34 78.36
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2. retro_ptro_2052 90.52 57.46
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Download FASTA sequences of all ENSPTRG00000013278 retrocopies