Parental gene:

BLOC1S6, ENSPTRG00000007038

Aliases:None
Description:biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:15:42737066..42753927(+)


>ENSPTRG00000007038
ATGAGTGTCCCTGGGCCGTCGTCTCCGGACGGGGCCCTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGACGCC
TGGTTTAAGTGACACTTCTCCAGATGAAGGGTTAATAGAGGACTTGACTATAGAAGACAAAGCTGTGGAGCAACTGGCAG
AAGGATTGCTTTCTCATTATTTGCCAGATCTGCAGAGATCAAAACAAGCCCTCCAGGAACTCACACAGAACCAAGTTGTA
TTGTTAGACACACTGGAACAAGAGATTTCAAAATTTAAAGAATGTCATTCTATGTTGGATATTAATGCTTTGTTTGCTGA
GGCTAAACACTATCATGCCAAGTTGGTGAATATAAGAAAAGAGATGCTGATGCTTCATGAAAAAACATCAAAGTTAAAAA
AAAGAGCACTTAAACTGCAGCAGAAGAGGCAAAAAGAAGAGTTGGAAAGGGAGCAGCAACGAGAGAAGGAGTTTGAAAGA
GAAAAGCAGTTAACTGCCAGACCAGCCAAAAGGATGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .88 RPM
SRP007412_cerebellum 3 .55 RPM
SRP007412_heart 3 .26 RPM
SRP007412_kidney 3 .16 RPM
SRP007412_liver 1 .54 RPM
SRP007412_testis 4 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012059 ortholog_one2one 7 retrogenes
retro_chof_1342, retro_chof_20, retro_chof_2054, retro_chof_2102, retro_chof_211, retro_chof_248, retro_chof_600,
Dasypus novemcinctus ENSDNOG00000019785 ortholog_one2one 5 retrogenes
retro_dnov_1687, retro_dnov_1885, retro_dnov_2009, retro_dnov_2411, retro_dnov_275,
Echinops telfairi ENSETEG00000007378 ortholog_one2one 1 retrogene
retro_etel_404,
Gorilla gorilla ENSGGOG00000013892 ortholog_one2one 1 retrogene
retro_ggor_2983,
Macropus eugenii ENSMEUG00000012636 ortholog_one2one 1 retrogene
retro_meug_778,
Microcebus murinus ENSMICG00000005595 ortholog_one2one 1 retrogene
retro_mmur_1610,
Monodelphis domestica ENSMODG00000017628 ortholog_one2one 2 retrogenes
retro_mdom_1673, retro_mdom_561,
Oryctolagus cuniculus ENSOCUG00000017351 ortholog_one2one 1 retrogene
retro_ocun_1575,
Otolemur garnettii ENSOGAG00000013706 ortholog_one2many 1 retrogene
retro_ogar_206,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2949 92.24 67.44
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Download FASTA sequences of all ENSPTRG00000007038 retrocopies