Parental gene:

LRRC57, ENSPTRG00000006976

Aliases:None
Description:leucine rich repeat containing 57 [Source:HGNC Symbol;Acc:26719]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:15:39537645..39543944(-)


>ENSPTRG00000006976
ATGGGAAACAGTGCGCTCCGCGCTCATGTGGAAACGGCGCAGAAAACTGGTGTCTTTCAGCTTAAGGACCGAGGGCTGAC
CGAGTTCCCCGCAGACTTGCAGAAGCTGACGAGCAATCTCAGGACAATCGACTTGTCCAACAACAAGATCGAAAGCCTAC
CGCCTTTGCTGATAGGAAAGTTCACTCTGCTGAAGAGCCTCTCCCTGAACAACAACAAACTGACTGTTCTGCCTGATGAG
ATATGCAATCTGAAAAAACTAGAGACGCTAAGCCTAAACAACAATCACCTTAGAGAGCTGCCGTCTACCTTTGGGCAACT
CTCTGCCCTCAAGACCCTGAGCCTCTCTGGGAACCAACTGGGAGCATTACCTCCCCAACTTTGTAGCCTACGGCACCTAG
ATGTGATGGATCTCTCTAAGAACCAGATTCGAAGTATACCTGACTCAGTGGGAGAGCTGCAAGTCATCGAACTCAACCTC
AACCAGAATCAGATATCTCAGATCTCAGTGAAGATATCTTGCTGTCCACGCCTTAAAATTCTTCGCCTGGAAGAGAATTG
TCTTGAGCTCAGCATGCTTCCCCAGAGCATCCTCAGTGATTCCCAGATCTGTCTGCTTGCTGTGGAAGGCAATCTTTTTG
AAATAAAGAAACTTCGAGAACTGGAAGGCTATGATAAGTACATGGAGAGGTTCACAGCCACCAAGAAGAAGTTTGCGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .24 RPM
SRP007412_cerebellum 6 .70 RPM
SRP007412_heart 6 .50 RPM
SRP007412_kidney 8 .05 RPM
SRP007412_liver 3 .93 RPM
SRP007412_testis 5 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006482 ortholog_one2one 1 retrogene
retro_chof_2306,
Callithrix jacchus ENSCJAG00000002991 ortholog_one2one 1 retrogene
retro_cjac_2819,
Homo sapiens ENSG00000180979 ortholog_one2one 1 retrogene
retro_hsap_2163,
Gorilla gorilla ENSGGOG00000009597 ortholog_one2one 1 retrogene
retro_ggor_1718,
Loxodonta africana ENSLAFG00000005465 ortholog_one2one 2 retrogenes
retro_lafr_1027, retro_lafr_767,
Macaca mulatta ENSMMUG00000001544 ortholog_one2one 1 retrogene
retro_mmul_901,
Nomascus leucogenys ENSNLEG00000004485 ortholog_one2one 1 retrogene
retro_nleu_1812,
Otolemur garnettii ENSOGAG00000007751 ortholog_one2one 1 retrogene
retro_ogar_3437,
Pan troglodytes ENSPTRG00000002325 other_paralog 1 retrogene
retro_ptro_425,
Rattus norvegicus ENSRNOG00000009143 ortholog_one2many 1 retrogene
retro_rnor_796,
Rattus norvegicus ENSRNOG00000048310 ortholog_one2many 1 retrogene
retro_rnor_1732,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1649 65.79 93.72
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2. retro_ptro_1650 66.23 93.72
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Download FASTA sequences of all ENSPTRG00000006976 retrocopies