Parental gene:

AP4S1, ENSPTRG00000006239

Aliases:None
Description:adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:14:29898862..29959451(+)


>ENSPTRG00000006239
ATGATAAAATTTTTCCTCATGGTGAATAAACAAGGGCAGACTCGACTTTCTAAGTACTATGAACATGTGGATATTAATAA
GCGTACACTTCTGGAAACAGAAGTCATAAAGAGCTGTCTCTCTCGATCCAATGAACAATGCTCTTTCATTGAATATAAGG
ATTTTAAGCTGATATATCGGCAGTATGCAGCTCTCTTCATTGTGGTTGGAGTTAATGACACTGAGAACGAGATGGCTATT
TATGAATTCATTCATAACTTTGTGGAAGTTTTAGATGAGTATTTCAGCCGAGTGAGTGAATTAGATGTATCCTTTTTCAA
TACTGTTTTCCACGGTACTTGGCAAATGCACTCTGGTCCTTATCAGGAACCAATTGATGAACTTCCCAAAATATGCTCAG
CCCTGGAGCCCCAGCAGGCTTGCTTTTCTCCAGACAGTTCATCATTCAAAGGAGCTGCCTCCACCACCCCCATCTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .77 RPM
SRP007412_cerebellum 4 .30 RPM
SRP007412_heart 1 .57 RPM
SRP007412_kidney 2 .46 RPM
SRP007412_liver 0 .59 RPM
SRP007412_testis 13 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013301 ortholog_one2one 4 retrogenes
retro_chof_2345, retro_chof_2677, retro_chof_393, retro_chof_820,
Dipodomys ordii ENSDORG00000009468 ortholog_one2one 1 retrogene
retro_dord_595,
Erinaceus europaeus ENSEEUG00000013009 ortholog_one2one 1 retrogene
retro_eeur_301,
Homo sapiens ENSG00000100478 ortholog_one2one 1 retrogene
retro_hsap_3496,
Gorilla gorilla ENSGGOG00000003198 ortholog_one2one 1 retrogene
retro_ggor_2363,
Monodelphis domestica ENSMODG00000017579 ortholog_one2one 1 retrogene
retro_mdom_1774,
Nomascus leucogenys ENSNLEG00000015901 ortholog_one2one 1 retrogene
retro_nleu_788,
Ornithorhynchus anatinus ENSOANG00000014031 ortholog_one2one 1 retrogene
retro_oana_60,
Pongo abelii ENSPPYG00000005723 ortholog_one2one 1 retrogene
retro_pabe_2889,
Pan troglodytes ENSPTRG00000012979 within_species_paralog 1 retrogene
retro_ptro_2258,
Pan troglodytes ENSPTRG00000019520 within_species_paralog 3 retrogenes
retro_ptro_1234, retro_ptro_24, retro_ptro_2554,
Pteropus vampyrus ENSPVAG00000017161 ortholog_one2one 1 retrogene
retro_pvam_1455,
Ictidomys tridecemlineatus ENSSTOG00000010759 ortholog_one2one 1 retrogene
retro_itri_1050,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2368 90.65 66.04
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Download FASTA sequences of all ENSPTRG00000006239 retrocopies