Parental gene:

OAT, ENSPTRG00000003028

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:123939079..123960754(-)


>ENSPTRG00000003028
ATGTTTTCCAAACTAGCACATTTGCAGAGGTTTGCTGTACTTAGTCGCGGAGTTCATTCTTCAGTGGCTTCTGCTACATC
TGTTGCAACTAAAAAAACAGTCCAAGGCCCTCCAACCTCTGATGACATTTTTGAAAGGGAATATAAGTATGGTGCACACA
ACTACCATCCTTTACCTGTAGCCCTGGAGAGAGGAAAAGGTATTTACTTATGGGATGTAGAAGGCAGAAAATATTTTGAC
TTCCTGAGTTCTTACAGTGCTGTCAACCAAGGGCATTGTCACCCCAAGATTGTGAATGCTCTGAAGAGTCAAGTGGACAA
ATTGACCTTAACATCTAGAGCTTTCTATAATAACGTACTTGGTGAATATGAGGAGTATATTACTAAACTTTTCAACTACC
ACAAAGTTCTTCCTATGAATACAGGAGTGGAGGCTGGAGAGACTGCCTGTAAACTAGCTCGTAAGTGGGGCTATACCGTG
AAGGGCATTCAGAAATACAAAGCAAAGATTGTTTTTGCAGCTGGGAACTTCTGGGGTAGGACGTTGTCTGCTATCTCCAG
TTCCACAGACCCAACCAGTTACGATGGTTTTGGACCATTTATGCCGGGATTCGACATCATTCCCTATAATGATCTGCCTG
CACTGGAGCGTGCTCTTCAGGATCCAAATGTGGCTGCGTTCATGGTAGAACCAATTCAGGGTGAAGCAGGCGTTGTTGTT
CCGGATCCAGGTTACCTAATGGGAGTGCGAGAGCTCTGCACCAGGCACCAGGTTCTGTTTATTGCTGATGAAATACAGAC
AGGATTGGCCAGAACTGGTAGATGGCTGGCTGTTGATTATGAAAATGTCAGACCTGATATAGTCCTCCTTGGAAAGGCCC
TTTCTGGGGGCTTATACCCTGTGTCTGCAGTGCTGTGTGATGATGACATCATGCTGACCATTAAGCCAGGGGAGCATGGG
TCCACATACGGTGGCAATCCACTAGGCTGCCGAGTGGCCATCGCAGCCCTTGAGGTTTTAGAAGAAGAAAACCTTGCTGA
AAATGCAGACAAATTGGGCATTATCTTGAGAAATGAACTCATGAAGCTACCTTCTGATGTTGTAACTGCCGTAAGAGGAA
AAGGATTATTAAACGCTATTGTCATTAAAGAAACCAAAGATTGGGATGCTTGGAAGGTGTGTCTACGACTTCGAGATAAT
GGACTTCTGGCCAAGCCAACCCATGGCGACATTATCAGGTTTGCGCCTCCGCTGGTGATCAAGGAGGATGAGCTTCGAGA
GTCCATTGAAATTATTAACAAGACCATCTTGTCTTTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 92 .77 RPM
SRP007412_cerebellum 68 .69 RPM
SRP007412_heart 20 .49 RPM
SRP007412_kidney 80 .65 RPM
SRP007412_liver 33 .88 RPM
SRP007412_testis 28 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012633 ortholog_one2one 1 retrogene
retro_cjac_2462,
Homo sapiens ENSG00000065154 ortholog_one2one 1 retrogene
retro_hsap_4828,
Gorilla gorilla ENSGGOG00000000848 ortholog_one2one 1 retrogene
retro_ggor_3010,
Macropus eugenii ENSMEUG00000005655 ortholog_one2one 1 retrogene
retro_meug_613,
Mus musculus ENSMUSG00000030934 ortholog_one2one 1 retrogene
retro_mmus_3475,
Nomascus leucogenys ENSNLEG00000000482 ortholog_one2one 2 retrogenes
retro_nleu_2176, retro_nleu_503,
Pongo abelii ENSPPYG00000002737 ortholog_one2one 2 retrogenes
retro_pabe_2989, retro_pabe_3754,
Sus scrofa ENSSSCG00000010734 ortholog_one2one 1 retrogene
retro_sscr_1181,
Tursiops truncatus ENSTTRG00000004225 ortholog_one2one 1 retrogene
retro_ttru_87,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3213 90.16 71.75
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Download FASTA sequences of all ENSPTRG00000003028 retrocopies