Parental gene:

CAP1, ENSPTRG00000000583

Aliases:None
Description:adenylyl cyclase-associated protein 1 [Source:RefSeq peptide;Acc:NP_001233522]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:40326599..40357995(+)


>ENSPTRG00000000583
ATGGCTGACATGCAAAATCTGGTAGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCAGTATCTCATACCTCTGACAT
GCACCGTGGGTATGCAGACAGTCCTTCAAAAGCAGGAGCAGCTCCATATGTGCAGGCATTTGACTCGCTGCTTGCTGGTC
CTGTGGCAGAGTACTTGAAGATCAGTAAAGAGATTGGGGGAGACGTGCAGAAACATGCGGAGATGGTCCACACAGGTTTG
AAGTTGGAGCGAGCTCTGTTGGTTACAGCTTCTCAGTGTCAACAGCCAGCAGAAAATAAGCTTTCCGATTTGTTGGCACC
CATCTCAGAGCAGATCAAAGAAGTGATAACCTTTCGGGAGAAGAACCGAGGCAGCAAGTTGTTTAATCACCTGTCAGCTG
TCAGCGAAAGTATCCAGGCCCTGGGCTGGGTGGCTATGGCTCCCAAGCCTGGCCCTTATGTGAAAGAAATGAATGATGCC
GCCATGTTTTATACAAACCGAGTCCTCAAAGAGTACAAAGATGTGGATAAGAAGCATGTAGACTGGGTCAAAGCTTATTT
AAGTATATGGACAGAGCTGCAGGCTTACATTAAGGAGTTCCATACCACCGGACTGGCCTGGAGCAAAACGGGGCCTGTGG
CAAAAGAACTGAGCGGACTGCCATCTGGACCCTCTGCCGGATCAGGTCCTCCTCCCCCTCCACCAGGCCCCCCTCCTCCC
CCAGTCTCTACCAGTTCAGGCTCAGATGAGTCCGCTTCCCGCTCAGCACTGTTCGCGCAGATTAATCAGGGGGAGAGCAT
TACACATGCCCTGAAACATGTATCTGATGACATGAAGACTCACAAGAACCCTGCCCTGAAGGCTCAGAGTGGTCCAGTAC
GCAGTGGCCCCAAACCATTCTCTGCACCTAAACCCCAAACCAGCCCATCCCCCAAACGAGCCACAAAGAAGGAGCCAGCT
GTACTTGAACTGGAGGGCAAGAAGTGGAGAGTGGAAAATCAGGAAAATGTTTCCAACCTGGTGATTGAGGACACAGAGCT
GAAACAGGTGGCTTACATATACAAGTGTGTCAACACGACATTGCAAATCAAGGGCAAAATTAACTCCATTACAGTAGATA
ACTGTAAGAAACTTGGCCTGGTATTCGATGACGTGGTGGGCATTGTGGAGATAATCAACAGTAAGGATGTCAAAGTTCAG
GTAATGGGTAAAGTGCCAACCATATCCATCAACAAAACAGATGGCTGCCATGCTTACCTGAGCAAGAATTCCCTGGATTG
TGAAATAGTCAGTGCCAAATCTTCCGAGATGAACGTCCTCATTCCTACAGAAGGCGGTGACTTTAATGAATTCCCAGTTC
CTGAGCAGTTCAAGACCCTATGGAACGGGCAGAAGTTGGTCACCACAGTGACAGAAATTGCTGGATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 104 .37 RPM
SRP007412_cerebellum 100 .95 RPM
SRP007412_heart 53 .31 RPM
SRP007412_kidney 145 .38 RPM
SRP007412_liver 137 .16 RPM
SRP007412_testis 193 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003012 possible_ortholog 2 retrogenes
retro_cfam_1316, retro_cfam_645,
Homo sapiens ENSG00000131236 ortholog_one2one 2 retrogenes
retro_hsap_2666, retro_hsap_664,
Gorilla gorilla ENSGGOG00000027527 ortholog_one2one 2 retrogenes
retro_ggor_1860, retro_ggor_575,
Macropus eugenii ENSMEUG00000004960 ortholog_one2one 1 retrogene
retro_meug_544,
Mus musculus ENSMUSG00000028656 ortholog_one2one 1 retrogene
retro_mmus_1265,
Nomascus leucogenys ENSNLEG00000012077 ortholog_one2one 2 retrogenes
retro_nleu_1600, retro_nleu_2221,
Otolemur garnettii ENSOGAG00000005492 ortholog_one2one 1 retrogene
retro_ogar_299,
Pongo abelii ENSPPYG00000001496 ortholog_one2one 4 retrogenes
retro_pabe_2212, retro_pabe_2358, retro_pabe_2415, retro_pabe_584,
Pan troglodytes ENSPTRG00000017750 within_species_paralog 1 retrogene
retro_ptro_987,
Rattus norvegicus ENSRNOG00000013492 ortholog_one2one 1 retrogene
retro_rnor_1180,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_484 88.39 64.84
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2. retro_ptro_1796 91.30 91.58
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Download FASTA sequences of all ENSPTRG00000000583 retrocopies