Parental gene:

PGGT1B, ENSPPYG00000015694

Aliases:None
Description:protein geranylgeranyltransferase type I, beta subunit [Source:HGNC Symbol;Acc:8895]
Organism:Orangutan (Pongo abelii)
Coordinates:5:116242495..116298519(-)


>ENSPPYG00000015694
ATGGCGGCCACTGAGGACGAGAGGCTAGCAGGGAGCGGTGAGGGAGAGCGGCTGGATTTCTTGCGGGATCGGCACGTGCG
ATTTTTCCAGCGCTGCCTCCAGGTTTTGCCGGAGCGCTATTCTTCACTCGAGACAAGCAGGTTGACAATTGCATTTTTTG
CACTCTCCGGGCTGGATATGTTGGATTCCTTAGATGTGGTGAACAAAGATGATATAATAGAGTGGATTTACTCCCTGCAG
GTCCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGTTTCCGAGGCTCTTCATACCTGGGTATTCCGTTCAATCC
ATCAAAGGCTCCTGGAACAGCTCATCCTTATGATAGTGGCCACATTGCAATGACCTACACTGGCCTCTCATGCTTAGTTA
TTCTTGGAGACGACTTAAGCCGAGTAAATAAAGAAGCTTGCTTAGCAGGCTTGAGAGCCCTTCAGCTGGAAGATGGGAGT
TTTTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACAA
CTGGTCAGGCATGGATATGAAAAAAGCCATGCATCCTATATTAGGAGAACGTATGTCCTATGACAATGGACTGGCACAGG
GAGCTGGACTTGAATCTCATGGAGGATCAACTTTTTGTGGCATTGCCTCACTATGTCTGATGGGTAAACTAGAAGAAGTT
TTTTCAGAAAAAGAATTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCATGGAAGACCTAATAA
GCCTGTAGACACCTGGTATTCTTTTTGGGTGGGAGCAACTCTAAAGCTTCTAAAAATTTTCCAATACACTAACTTTGAGA
AAAATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGGGGATTTGCCAAGTGGCCAGACAGTCATCCAGATGCT
TTGCATGCATACTTTGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGAATTTGTAAGGTTCATCCTGCTCTGAATGT
AAGCACACGGACTTCTGAACGCCTTCTAGATCTCCATCAAAGCTGGAAAACCAAGGACTCTAAACAATGCTCAGAGAATG
TACATATCTCCACA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .21 RPM
SRP007412_cerebellum 2 .80 RPM
SRP007412_heart 4 .00 RPM
SRP007412_kidney 5 .44 RPM
SRP007412_liver 3 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016700 ortholog_one2one 1 retrogene
retro_cjac_1058,
Cavia porcellus ENSCPOG00000002443 ortholog_one2one 1 retrogene
retro_cpor_1344,
Homo sapiens ENSG00000164219 ortholog_one2one 2 retrogenes
retro_hsap_675, retro_hsap_698,
Loxodonta africana ENSLAFG00000003752 ortholog_one2one 1 retrogene
retro_lafr_668,
Pan troglodytes ENSPTRG00000017146 ortholog_one2one 2 retrogenes
retro_ptro_444, retro_ptro_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_527 88.14 62.17
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2. retro_pabe_545 87.76 62.43
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3. retro_pabe_640 91.06 62.17
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Download FASTA sequences of all ENSPPYG00000015694 retrocopies