Parental gene: | DDX18, ENSPPYG00000012796 |
| Aliases: | None |
| Description: | ATP-dependent RNA helicase DDX18 [Source:RefSeq peptide;Acc:NP_001126280] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 2b:16701267..16715971(-) |
>ENSPPYG00000012796
ATGTCTCACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTT
GCAGGGGGCCTCAAATCTGACCCTATCAGAAACTCAAAATGGAGATGTATCTGAAGAAACAATGGGAAGTAGAAAGGTTA
AAAAATCAAAACAAAAGCCCATGAATGTGGGCTTATCAGAAACTCAAAATGGAGACATGTCTCAAGAAGCAGTAGAAAAT
ATAAAAGTTAAAAAATCTCCCCAGAAATCCACTGTATTAACCAATGGAGAAGCAGCAATGCAGTCTCCCAACTCAGAATC
AAAAAAGAAAAAGAAGAAAAAGAGAAAAATGGTGAATGATGCTGAGCCTGATACAAAAAAAGCAAAAACTGAAAACAAAG
GGCAACCTGAAGAAGAAAGTGCCGAGACTCCTAAAGAAACAGAGAATAATGTGGAGAAGCCAGATAATGATGAAGATGAG
AGTGAGGTGCCCAGTCTGCCCCTGGGACTGACAGGAGCTTTTGAGGATACTTCGTTTGCTTCTCTATGTAATCTTGTCAA
TGAAAACACCCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATCAGACCACTTC
TGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTCTCATCCCTGCGGTTGAACTC
ATTGTTAAGTTAAGGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCTCTCACCTACTAGAGAACTAGCCATGCAAAC
TTTTGGTGTTCTTAAGGAGCTAATGACTCACCACGTGCATACCTATGGCTTGATAATGGGTGGCAGTAACAGATCTGCTG
AAGCACAGAAACTTGCTAATGGGATCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAATACCCCA
GGATTTATGTATAAAAACCTGCAGTGTCTGGTTATTGATGAAGCTGATCGTATCTTGGATGTGGGGTTTGAAGAGGAATT
AAAGCAAATTATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACC
TGGCAAGGATTTCTCTGAAAAAGGAGCCATTGTATGTTGGTGTCGATGATGATAAAGCTAATGCAACAGTGGATGGTCTT
GAGCAGGGATATGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTTAAGAAGAACCGAAAGAAGAA
GCTTATGGTCTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGTTGCTGAACTACATTGATTTGCCCGTCTTGG
CCATTCATGGAAAGCAAAAGCAAAATAAGCGTACAACCACATTCTTCCAGTTCTGCAATGCAGATTCGGGAACACTGTTG
TGTACAGATGTGGCAGCAAGAGGACTGGACATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCTCCGGATGACCCTAA
GGAATATATTCATCGTGTGGGTAGAACAGCCAGAGGCCTAAATGGAAGAGGGCATGCCTTGCTCATTTTGCGCCCAGAAG
AATTGGGTTTTCTTCGCTACTTGAAACAATCCAAGGTTCCATTAAGTGAATTTGACTTTTCCTGGTCTAAAATTTCTGAC
ATTCAGTCTCAGCTTGAGAAATTGATTGAAAAGAATTACTTTCTTCATAAGTCAGCCCAGGAAGCATATAAGTCATACAT
ACGAGCCTATGATTCCCATTCTCTGAAACAGATCTTTAATGTTAATAACTTAAATTTGCCTCAAGTTGCTCTGTCATTTG
GCTTCAAGGTGCCTCCCTTCGTTGATCTGAGTATC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 13 .66 RPM |
| SRP007412_cerebellum | 14 .23 RPM |
| SRP007412_heart | 8 .22 RPM |
| SRP007412_kidney | 10 .61 RPM |
| SRP007412_liver | 12 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000017166 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000088205 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000028420 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000017590 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017607 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000021343 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000533 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011769 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000012391 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_744 | 89.61 | 61.12 | Please wait, loading  |
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| 2. | retro_pabe_1128 | 85.35 | 100.00 | Please wait, loading |
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| 3. | retro_pabe_1301 | 81.38 | 96.00 | Please wait, loading |
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| 4. | retro_pabe_2670 | 89.20 | 56.16 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000012796 retrocopies