Parental gene:

CHMP4B, ENSPPYG00000010931

Aliases:None
Description:charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171]
Organism:Orangutan (Pongo abelii)
Coordinates:20:30980966..31024456(+)


>ENSPPYG00000010931
ATGTCGGTGTTCGGGAAGCTGTTCGGGGCTGGAGGGGGTAAGGCCGGCAAGGGCGGCCCGACCCCCCAGGAGGCCATCCA
GCGGCTGCGGGACACGGAAGAGATGTTAAGCAAGAAACAGGAGTTCCTGGAGAAGAAAATCGAGCAGGAGGCCCTCCAGG
CACTGAAGCGTAAGAAGAGGTATGAGAAGCAGCTGGCGCAGATCGACGGCACATTATCAACCATCGAGTTCCAGCGGGAG
GCCCTGGAGAATGCCAACACCAACACCGAGGTGCTCAAGAACATGGGCTATGCCGCCAAGGCCATGAAGGCGGCCCATGA
CAACATGGACATCGATAAAGTTGATGAGTTAATGCAGGACATTGCTGACCAGCAAGAACTTGCGGAAGAGATTTCAACAG
CAATTTCAAAACCTGTAGGGTTTGGAGAAGAGTTTGATGAGGATGAGCTCATGGCGGAATTAGAAGAACTAGAACAGGAG
GAACTAGACAAGAATTTGCTGGAAATCAGTGGACCCGAAACAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATC
AAAACCCGCCAAGAAGAAAGAAGAGGAGGATGACGACATGAAGGAATTGGAGAACTGGGCTGGATCCATGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 128 .11 RPM
SRP007412_cerebellum 58 .49 RPM
SRP007412_heart 39 .59 RPM
SRP007412_kidney 72 .39 RPM
SRP007412_liver 56 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009038 ortholog_one2one 1 retrogene
retro_amel_1612,
Canis familiaris ENSCAFG00000007478 ortholog_one2one 1 retrogene
retro_cfam_1304,
Choloepus hoffmanni ENSCHOG00000007288 ortholog_one2one 1 retrogene
retro_chof_2518,
Equus caballus ENSECAG00000008311 ortholog_one2one 1 retrogene
retro_ecab_496,
Felis catus ENSFCAG00000025893 ortholog_one2one 1 retrogene
retro_fcat_1835,
Homo sapiens ENSG00000101421 ortholog_one2one 1 retrogene
retro_hsap_1339,
Gorilla gorilla ENSGGOG00000007775 ortholog_one2one 1 retrogene
retro_ggor_29,
Macaca mulatta ENSMMUG00000008084 ortholog_one2one 1 retrogene
retro_mmul_2178,
Mustela putorius furo ENSMPUG00000017821 ortholog_one2one 2 retrogenes
retro_mputfur_1302, retro_mputfur_697,
Nomascus leucogenys ENSNLEG00000010020 ortholog_one2one 1 retrogene
retro_nleu_1822,
Pongo abelii ENSPPYG00000005691 within_species_paralog 1 retrogene
retro_pabe_1937,
Pan troglodytes ENSPTRG00000013408 ortholog_one2one 1 retrogene
retro_ptro_915,
Pteropus vampyrus ENSPVAG00000010293 ortholog_one2one 1 retrogene
retro_pvam_973,
Rattus norvegicus ENSRNOG00000046585 possible_ortholog 1 retrogene
retro_rnor_61,
Tarsius syrichta ENSTSYG00000013212 ortholog_one2one 1 retrogene
retro_tsyr_1453,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1111 77.42 87.14
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Download FASTA sequences of all ENSPPYG00000010931 retrocopies