Parental gene:

ENSPPYG00000005031

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:12:122674511..122683572(-)


>ENSPPYG00000005031
ATGTCGGGCTGGGCGGACGAGCGCGGCGGCGAGGGCGACGGGCGCATCTACGTGGGGAACCTTCCGACCGACGTGCGCGA
GAAGGACTTGGAGGACCTGTTCTACAAGTACGGCCGCATCCGCGAGATCGAGCTCAAGAACCGGCACGGCCTCGTGCCCT
TCGCCTTCGTGCGCTTCGAGGACCCCCGAGATGCAGAGGATGCTATTTATGGAAGAAATGGTTATGATTATGGCCAGTGT
CGGCTTCGTGTGGAGTTCCCCAGGACTTATGGAGGTCGGGGTGGGTGGCCCCGTGGTGGGAGGAATGGGCCTCCTACAAG
AAGATCTGATTTCCGAGTTCTTGTTTCAGGACTTCCTCCGTCAGGCAGCTGGCAGGACCTGAAGGATCACATGCGAGAAG
CTGGGGATGTCTGTTATGCTGATGTGCAGAAGGATGGAGTGGGGATGGTTGAGTATCTCAGAAAAGAAGACATGGAATAT
GCCCTGCGTAAACTGGATGACACCAAATTCCGCTCTCATGAGGGTGAAACTTCCTACATCCGAGTTTATCCTGAGAGAAG
CACCAGCTATGGCTACTCACGGTCTCGGTCTGGGTCAAGGGGCCGTGACTCTCCATACCAAAGCAGGGGTTCCCCACACT
ACTTCTCTCCTTTCAGGCCCTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 25 .05 RPM
SRP007412_cerebellum 13 .50 RPM
SRP007412_heart 4 .85 RPM
SRP007412_kidney 26 .52 RPM
SRP007412_liver 18 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012792 ortholog_one2many 1 retrogene
retro_btau_837,
Choloepus hoffmanni ENSCHOG00000009241 ortholog_one2many 1 retrogene
retro_chof_1119,
Callithrix jacchus ENSCJAG00000001187 ortholog_one2many 1 retrogene
retro_cjac_442,
Dasypus novemcinctus ENSDNOG00000012598 ortholog_one2many 2 retrogenes
retro_dnov_1555, retro_dnov_2648,
Homo sapiens ENSG00000111786 ortholog_one2many 1 retrogene
retro_hsap_2530,
Macaca mulatta ENSMMUG00000016494 ortholog_one2many 1 retrogene
retro_mmul_2154,
Nomascus leucogenys ENSNLEG00000015661 ortholog_one2many 1 retrogene
retro_nleu_1931,
Otolemur garnettii ENSOGAG00000003852 ortholog_one2many 1 retrogene
retro_ogar_2328,
Ochotona princeps ENSOPRG00000004234 ortholog_one2many 1 retrogene
retro_opri_878,
Pongo abelii ENSPPYG00000011019 within_species_paralog 1 retrogene
retro_pabe_1483,
Sarcophilus harrisii ENSSHAG00000005685 ortholog_one2many 1 retrogene
retro_shar_598,
Sus scrofa ENSSSCG00000009906 ortholog_one2many 1 retrogene
retro_sscr_745,
Tupaia belangeri ENSTBEG00000008499 ortholog_one2many 1 retrogene
retro_tbel_2602,
Tarsius syrichta ENSTSYG00000006848 ortholog_one2many 4 retrogenes
retro_tsyr_1432, retro_tsyr_1648, retro_tsyr_585, retro_tsyr_891,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_119 98.64 100.00
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Download FASTA sequences of all ENSPPYG00000005031 retrocopies