Parental gene:

SRSF9, ENSDNOG00000012598

Aliases:None
Description:serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_5687:12287..18748(-)


>ENSDNOG00000012598
ATGTCGGGCTGGGCAGACGAACGCGGCGGTGAGGGCGACGGGCGCATCTACGTGGGAAACCTTCCGACCGACGTGCGCGA
GAAGGACCTGGAGGACTTGTTCTACAAGTACGGCCGCATCCGCGAGATCGAGCTCAAGAACCGGCACGGCCTCGTGCCCT
TCGCCTTCGTGCGCTTCGAGGACCCCCGAGATGCCGAGGATGCAATTTATGGAAGGAATGGTTATGATTATGGCCAGTGT
CGGCTTCGTGTGGAGTTTCCCAGGACTTACGGAGGTCGGGGCGGATGGCCCCGTGGTGGGAGGAATGGGCCTCCCACAAG
AAGATCTGATTTCCGAGTTCTTGTTTCAGGACTTCCTCCATCAGGCAGCTGGCAGGACCTGAAGGATCACATGCGAGAGG
CTGGGGATGTCTGTTATGCAGATGTGCAGAAGGATGGAATGGGGATGGTTGAATATCTCAGAAAAGAAGACATGGAATAT
GCCCTGCGTAAACTGGATGACACCAAATTCCGCTCTCATGAGGGTGAAACTTCCTACATCCGAGTTTATCCAGAGAGAAG
CACCAGCTATGGCTACTCACGGTCTCGATCTGGATCAAGGGGCCGTGACTCTCCATACCAAAGCAGGGGTTCCCCACACT
ACTTCTCCCCTTTCAGGCCCTACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 69 .81 RPM
SRP012922_cerebellum 40 .97 RPM
SRP012922_heart 7 .43 RPM
SRP012922_kidney 58 .32 RPM
SRP012922_liver 39 .63 RPM
SRP012922_lung 49 .02 RPM
SRP012922_quadricep_muscle 4 .50 RPM
SRP012922_spleen 48 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012792 ortholog_one2one 1 retrogene
retro_btau_837,
Choloepus hoffmanni ENSCHOG00000009241 ortholog_one2one 1 retrogene
retro_chof_1119,
Callithrix jacchus ENSCJAG00000001187 ortholog_one2one 1 retrogene
retro_cjac_442,
Dasypus novemcinctus ENSDNOG00000000421 other_paralog 9 retrogenes
retro_dnov_1326, retro_dnov_1513, retro_dnov_1702, retro_dnov_1951, retro_dnov_2153, retro_dnov_2328, retro_dnov_2491, retro_dnov_569, retro_dnov_784,
Dasypus novemcinctus ENSDNOG00000007821 other_paralog 2 retrogenes
retro_dnov_317, retro_dnov_829,
Homo sapiens ENSG00000111786 ortholog_one2one 1 retrogene
retro_hsap_2530,
Macaca mulatta ENSMMUG00000016494 ortholog_one2one 1 retrogene
retro_mmul_2154,
Nomascus leucogenys ENSNLEG00000015661 ortholog_one2one 1 retrogene
retro_nleu_1931,
Otolemur garnettii ENSOGAG00000003852 ortholog_one2one 1 retrogene
retro_ogar_2328,
Ochotona princeps ENSOPRG00000004234 ortholog_one2one 1 retrogene
retro_opri_878,
Pongo abelii ENSPPYG00000005031 ortholog_one2many 1 retrogene
retro_pabe_119,
Sarcophilus harrisii ENSSHAG00000005685 ortholog_one2one 1 retrogene
retro_shar_598,
Sus scrofa ENSSSCG00000009906 ortholog_one2one 1 retrogene
retro_sscr_745,
Tupaia belangeri ENSTBEG00000008499 ortholog_one2one 1 retrogene
retro_tbel_2602,
Tarsius syrichta ENSTSYG00000006848 ortholog_one2one 4 retrogenes
retro_tsyr_1432, retro_tsyr_1648, retro_tsyr_585, retro_tsyr_891,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1555 79.44 79.64
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2. retro_dnov_2648 64.57 55.20
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Download FASTA sequences of all ENSDNOG00000012598 retrocopies