Parental gene: | DDX50, ENSPPYG00000002390 |
| Aliases: | None |
| Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Source:HGNC Symbol;Acc:17906] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 10:66557378..66668785(-) |
>ENSPPYG00000002390
ATGAAAGAGAAGCTAAATGGAGACACTGAAGAAGGATTTAATAGACTTTCAGATGAATTCTCCAAATCTCATAAGTCAAG
AAGAAAAGATCTACCAAATGGAGATATTGATGAATATGAAAAAAAATCAAAGCGAGTATCATCCTTAGATACTTCTACTC
ATAAATCAAGTGATAATAAACTAGAGGAGACCTTAACACGTGAACAGAAAGAAGGAGCCTTCTCCAATTTTCCTATTTCT
GAAGAGACTATAAAGCTTCTGAAAGGTCGAGGGGTAACATATCTCTTTCCTATTCAAGTTAAGACCTTTGGTCCTGTATA
TGAAGGAAAAGATTTAATAGCTCAAGCACGGACAGGAACAGGAAAGACATTCTCTTTTGCCATCCCCTTAATTGAAAGAC
TCCAAAGAAATCAAGAAACAATTAAAAAAAGCCGCTCACCAAAGGTACTTGTTTTGGCTCCAACAAGGGAACTGGCAAAC
CAGGTAGCCAAAGACTTCAAAGATATAACTAGGAAACTCAGTGTGGCGTGTTTTTATGGTGGAACATCATATCAAAGCCA
AATTAATCATATTCGAAATGGTATTGACATCTTGGTTGGAACACCTGGTCGTATCAAAGACCATCTGCAGAGTGGCCGAT
TGGATCTTTCTAAACTGCGACATGTTGTGCTTGATGAAGTGGATCAGATGTTAGATTTAGGTTTCGCTGAACAAGTTGAA
GATATTATTCACGAATCCTACAAAACTGATTCTGAAGACAATCCTCAGACTTTACTTTTTTCTGCAACTTGCCCACAGTG
GGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATATGAACAGGTTGACCTTGTTGGAAAAATGACTCAAAAGGCTG
CAACTACTGTGGAACATTTGGCCATCCAGTGTCATTGGTCTCAGAGGCCAGCAGTTATTGGAGATGTCCTTCAAGTCTAC
AGTGGGTCTGAAGGGAGGGCTATTATTTTCTGTGAGACCAAGAAGAATGTAACTGAAATGGCCATGAATCCACACATAAA
ACAGAATGCCCAGTGTTTACATGGGGACATTGCACAGTCACAAAGAGAAATTACACTAAAAGGCTTCAGAGAAGGTAGTT
TTAAAGTTTTGGTGGCAACCAATGTGGCTGCCCGTGGTTTGGACATTCCTGAAGTTGACCTGGTGATTCAAAGTTCTCCT
CCTCAGGATGTTGAGTCCTATATCCATCGCTCTGGACGCACAGGTAGAGCTGGACGGACAGGGATTTGTATATGTTTTTA
TCAACCAAGAGAAAGAGGTCAACTAAGATATGTGGAACAAAAAGCAGGAATTACTTTTAAACGTGTAGGTGTTCCTTCTA
CAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTCTGGCTTCCGTTTCTTATGCTGCTGTTGATTTTTTC
CGACCATCAGCTCAGAGACTGATAGAAGAGAAAGGTGCAGTGGATGCATTGGCTGCAGCTTTAGCCCACATTTCTGGTGC
ATCAAGCTTTGAACCACGATCTTTGATCACCTCTGATAAGGGGTTTGTGACCATGACTCTGGAAAGCCTAGAGGAAATAC
AGGATGTCAGCTGTGCTTGGAAAGAACTTAACAGAAAGCTGAGTAGTAATGCAGTGTCTCAGATTACCAGAATGTGCCTC
CTGAAAGGAAATATGGGTGTTTGCTTTGATGTTCCTACAACTGAGTCAGAAAGGTTACAGGCAGAGTGGCATGATTCCGA
CTGGATACTCTCAGTGCCAGCCAAATTACCTGAAATTGAAGAATATTATGATGGAAACACATCTTCTAATTCCAGACAGA
GGAGTGGCTGGTCAAGTGGTCGATCGGGCCGGTCAGGCCGGTCAGGTGGTCGATCTGGCGGCCGGTCAGGTAGACAGAGT
CGACAAGGAAGTCGCTCAGGAAGTCGACAAGATGGTAGAAGACGAAGTGGGAATAGAAATCGATCAAGAAGTGGGGGCCA
CAAACGGAGTTTTGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 24 .94 RPM |
| SRP007412_cerebellum | 36 .72 RPM |
| SRP007412_heart | 16 .20 RPM |
| SRP007412_kidney | 25 .39 RPM |
| SRP007412_liver | 20 .56 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018844 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000107625 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001006 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000020076 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011631 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001844 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002389 | within_species_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016774 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002562 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2007 | 88.70 | 61.76 | Please wait, loading  |
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| 2. | retro_pabe_2369 | 83.97 | 61.76 | Please wait, loading |
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| 3. | retro_pabe_2418 | 81.23 | 52.68 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000002390 retrocopies