Parental gene:

ATF1, ENSOCUG00000017023

Aliases:None
Description:activating transcription factor 1 [Source:HGNC Symbol;Acc:783]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:34625887..34678209(-)


>ENSOCUG00000017023
ATGGAAGATTCCCACAAGAGTAACGCTTCAGAGACAGCGCCTCAAGCTGGTTCAGCAGTTCAGGGAGCTCACATTTCTCA
ACAGGTATCATCTTTATCAGAAAGTGAGGAGTCTCAGGACTCATCTGACAGCATAGGCTCCTCACAGAAAGCCCCCGGGA
TCCTAGCACTACGCCCATCCTACAGAAAAATTTTGAAAGCCCTCTCTTCTGAAGATACACGAGGCAGAAAAGGAGACGGA
GAAAACCCTGGAGTTTCTGCTGTTACTTCTATGTCTGTTCCAACTTCCATCTATCAGACTAGCAGCGGACAGTACATTGC
CATTGCCCCGAATGGAGCCTTACAGTTGGCCAGTCCAGGCGCAGACGGAGTACAGGGACTGCAGACGTTGCCCATGACCA
ATTCAGGCAGCACTCAGCAAGGTACAATTCTGCAGTACGCACAGACCTCGGACGGACAGCAAATACTTGTGCCCAGCAAC
CAGGTGGTTGTACAGACCTCAGGAGATATGCAGACCTACCAGATCCGGACCACGCCCTCGGCGACTTCACTGCCACAGGC
TGTGGTGATGACATCTCCTGTGACGCTGACGTCTCAGACAACTAAGACAGATGACCCTCAGTTGAAGAGAGAAATACGGC
TCATGAAAAACAGAGAAGCTGCTCGAGAATGTCGCAGAAAGAAGAAAGAGTATGTGAAATGCCTGGAGAATCGAGTTGCA
GTTCTGGAGAATCAAAATAAAACTCTGATAGAAGAGTTAAAGACTTTAAAAGATCTTTATTCCCATAAAAGTGTTTGA

Library Parental gene expression (RPM)
SRP017611_brain 12 .91 RPM
SRP017611_kidney 21 .39 RPM
SRP017611_liver 14 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004733 ortholog_one2one 5 retrogenes
retro_chof_1987, retro_chof_2305, retro_chof_27, retro_chof_462, retro_chof_760,
Erinaceus europaeus ENSEEUG00000008000 ortholog_one2one 2 retrogenes
retro_eeur_332, retro_eeur_704,
Homo sapiens ENSG00000123268 ortholog_one2one 1 retrogene
retro_hsap_3633,
Mus musculus ENSMUSG00000023027 ortholog_one2one 1 retrogene
retro_mmus_3609,
Otolemur garnettii ENSOGAG00000026029 ortholog_one2one 1 retrogene
retro_ogar_1378,
Procavia capensis ENSPCAG00000010038 ortholog_one2one 2 retrogenes
retro_pcap_303, retro_pcap_442,
Sarcophilus harrisii ENSSHAG00000004637 ortholog_one2one 2 retrogenes
retro_shar_221, retro_shar_635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_383 86.79 58.49
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Download FASTA sequences of all ENSOCUG00000017023 retrocopies