Parental gene:

Atf1, ENSMUSG00000023027

Aliases:None
Description:activating transcription factor 1 [Source:MGI Symbol;Acc:MGI:1298366]
Organism:Mouse (Mus musculus)
Coordinates:15:100227818..100261244(+)


>ENSMUSG00000023027
ATGGAAGATTCCCACAAGAGTAACACGACAGAGACTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTCACGTTTCTCA
GATAGTACATCAGGTGTCATCGTTATCAGAAAGTGAGGAGTCTCAGGACTCATCTGACAGCATAGGCTCCTCACAGAAAG
CTCACGGGATCCTGGCCCGGCGCCCATCCTACAGGAAAATTTTGAAAGACCTCTCTTCTGAAGATACACGGGGCAGAAAA
GGGGAAGGAGAAAATCCCAGCATTTCTGCCATCACGTCTATGTCTGTTCCAGCCCCCATCTATCAGACGAGCAGCGGACA
GTACATTGCCATTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATGGAGTGCAGGCACTGCAGACATTAA
CCATGACAAATTCAAGCAGTACTCAGCAGGGGACGATCCTCCAGTATGCACAGACCTCTGACGGACAGCAGATACTCGTC
CCGAGCAACCAGGTGGTTGTACAGACTGCATCAGGAGATATGCAGACCTACCAGATCCGTACCACGCCGTCTGCCACGTC
TCTCCCGCAGACCGTGGTGATGACTTCTCCTGTGACTCTTGCATCTCAGACAACAAAGACAGATGACCCTCAACTAAGAA
GAGAAATACGACTGATGAAAAACAGAGAAGCTGCCCGAGAGTGCCGCCGGAAGAAGAAGGAGTACGTGAAGTGCCTGGAG
AACCGTGTTGCTGTTCTGGAAAATCAAAATAAAACTCTAATAGAGGAGCTAAAGACTTTGAAGGACCTTTATTCTCATAA
AAGTGTTTGA

Library Parental gene expression (RPM)
SRP007412_brain 7 .50 RPM
SRP007412_cerebellum 9 .73 RPM
SRP007412_heart 27 .55 RPM
SRP007412_kidney 22 .68 RPM
SRP007412_liver 19 .33 RPM
SRP007412_testis 54 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004733 ortholog_one2one 5 retrogenes
retro_chof_1987, retro_chof_2305, retro_chof_27, retro_chof_462, retro_chof_760,
Erinaceus europaeus ENSEEUG00000008000 ortholog_one2one 2 retrogenes
retro_eeur_332, retro_eeur_704,
Homo sapiens ENSG00000123268 ortholog_one2one 1 retrogene
retro_hsap_3633,
Oryctolagus cuniculus ENSOCUG00000017023 ortholog_one2one 1 retrogene
retro_ocun_383,
Procavia capensis ENSPCAG00000010038 ortholog_one2one 2 retrogenes
retro_pcap_303, retro_pcap_442,
Sarcophilus harrisii ENSSHAG00000004637 ortholog_one2one 2 retrogenes
retro_shar_221, retro_shar_635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_3609 97.40 100.00
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Download FASTA sequences of all ENSMUSG00000023027 retrocopies