Parental gene:

VDAC1, ENSOCUG00000009369

Aliases:None
Description:voltage-dependent anion channel 1 (VDAC1), nuclear gene encoding mitochondrial protein, mRNA [Source:RefSeq mRNA;Acc:NM_001082075]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:16847322..16863448(-)


>ENSOCUG00000009369
ATGGCTGTACCTCCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTACGGATTTGGCTTAAT
AAAGCTTGATTTGAAAACAAAGTCCGAGAATGGATTGGAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAG
TGACGGGCAGTCTGGAAACCAAGTACAGGTGGACTGAGTACGGGCTGACGTTTACGGAGAAATGGAACACCGACAACACG
CTGGGCACCGAGATCACCGTGGAAGACCAGCTTGCACGTGGACTGAAGCTGACCTTCGATTCCTCCTTCTCGCCTAACAC
TGGGAAAAAAAATGCTAAAATCAAGACAGGCTACAAGCGGGAGCACATCAACCTGGGCTGCGACGTGGATTTCGACATCG
CTGGGCCCTCCATCCGGGGTGCTCTGGTGCTGGGTTATGAGGGCTGGCTGGCTGGCTACCAGATGAACTTTGAGACTGCC
AAGTCCCGAGTCACCCAGAGCAACTTTGCCGTCGGCTACAAGACCGATGAATTCCAGCTCCACACTAATGTGAACGACGG
AACGGAGTTTGGCGGCTCCATTTACCAGAAGGTGAACAAGAAGCTGGAGACGGCCGTCAATCTTGCCTGGACAGCAGGAA
ACAGTAACACTCGCTTCGGAATAGCAGCCAAGTATCAGATCGACCCTGACGCCTGCTTCTCGGCAAAAGTGAACAACTCC
AGCCTGATAGGATTAGGATACACTCAGACCCTAAAGCCAGGTATCAAACTGACGCTCTCAGCTCTGCTGGATGGCAAGAA
CGTCAACGCTGGCGGCCACAAGCTTGGTCTAGGACTGGAGTTTCAGGCATAA

Library Parental gene expression (RPM)
SRP017611_brain 195 .42 RPM
SRP017611_kidney 215 .99 RPM
SRP017611_liver 71 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000013556 possible_ortholog 8 retrogenes
retro_cjac_1216, retro_cjac_1669, retro_cjac_1728, retro_cjac_2677, retro_cjac_3183, retro_cjac_3864, retro_cjac_454, retro_cjac_907,
Cavia porcellus ENSCPOG00000023840 ortholog_one2many 2 retrogenes
retro_cpor_1061, retro_cpor_699,
Dipodomys ordii ENSDORG00000000714 ortholog_one2one 1 retrogene
retro_dord_636,
Felis catus ENSFCAG00000008421 possible_ortholog 1 retrogene
retro_fcat_1592,
Gorilla gorilla ENSGGOG00000010880 possible_ortholog 3 retrogenes
retro_ggor_693, retro_ggor_875, retro_ggor_981,
Macaca mulatta ENSMMUG00000016235 possible_ortholog 6 retrogenes
retro_mmul_1023, retro_mmul_1070, retro_mmul_1305, retro_mmul_1851, retro_mmul_2417, retro_mmul_2613,
Monodelphis domestica ENSMODG00000014157 ortholog_one2one 1 retrogene
retro_mdom_1120,
Mustela putorius furo ENSMPUG00000010220 possible_ortholog 1 retrogene
retro_mputfur_83,
Mus musculus ENSMUSG00000020402 ortholog_one2one 3 retrogenes
retro_mmus_2013, retro_mmus_3079, retro_mmus_3124,
Otolemur garnettii ENSOGAG00000030742 possible_ortholog 2 retrogenes
retro_ogar_1197, retro_ogar_2876,
Rattus norvegicus ENSRNOG00000006375 ortholog_one2many 8 retrogenes
retro_rnor_1235, retro_rnor_1398, retro_rnor_1482, retro_rnor_1594, retro_rnor_1664, retro_rnor_776, retro_rnor_777, retro_rnor_947,
Sorex araneus ENSSARG00000008221 ortholog_one2one 6 retrogenes
retro_sara_115, retro_sara_327, retro_sara_355, retro_sara_533, retro_sara_668, retro_sara_702,
Ictidomys tridecemlineatus ENSSTOG00000007764 ortholog_one2one 3 retrogenes
retro_itri_1137, retro_itri_1506, retro_itri_693,
Tupaia belangeri ENSTBEG00000003852 ortholog_one2one 4 retrogenes
retro_tbel_1282, retro_tbel_2613, retro_tbel_3818, retro_tbel_4546,
Tarsius syrichta ENSTSYG00000007346 ortholog_one2one 1 retrogene
retro_tsyr_161,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_583 97.52 85.51
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2. retro_ocun_1253 69.23 54.77
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3. retro_ocun_1428 89.30 94.70
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Download FASTA sequences of all ENSOCUG00000009369 retrocopies