Parental gene:

SNF8, ENSOCUG00000009156

Aliases:None
Description:SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:19:38484740..38494714(+)


>ENSOCUG00000009156
ATGCACCGCCGCGGGGTGGGAGCCGGCGCCATCGCCAAGAAGAAGCTGGCTGAGGCCAAGTATAAGGAGCGAGGGACTGT
CTTGGCGGAGGACCAGCTGGCGCAGATGTCAAAGCAGCTGGACATGTTCAAGACCAACCTGGAGGAATTCGCCAGCAAGC
ACAAGCAGGAGATCCGGAAGAATCCCGAGTTCCGGGTGCAGTTCCAGGACATGTGCGCGACCATTGGGGTGGATCCTCTG
GCCTCTGGAAAAGGATTCTGGTCACAGATGCTGGGAGTGGGGGACTTCTATTATGAGCTGGGCGTCCAGATTATCGAAGT
GTGCCTGGCCCTGAAGCACCGCAATGGAGGTCTGATCACTCTGGAAGAGCTACATCAGCAGGTGTTAAAGGGAAGAGGCA
AGTTCGCGCAGGACGTCAGCCAAGATGACCTCATCAGGGCCATCAAGAAACTTAAGGCGCTCGGCACCGGCTTCGGCATC
ATCCCCGTGGGCGGCACTTACCTCATTCAGTCTGTTCCAGCTGAACTCAACATGGATCACACCGTGGTGCTGCAGCTGGC
AGAGAAAAATGGTTACGTGACTGTAAGTGAAATCAAAGCCAGTCTTAAATGGGAGACCGAGCGTGCGCGCCAAGTGCTGG
AACACCTGCTGAAGGAAGGGCTGGCCTGGCTGGACTTGCAGGCCCCAGGAGAGGCCCACTACTGGCTGCCAGCTCTCTTC
ACTGACCTCTACTCCCAGGAAATCACAGCTGAGGAGGCCAGAGAAGCCCTCCCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 28 .97 RPM
SRP017611_kidney 51 .79 RPM
SRP017611_liver 20 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005062 ortholog_one2one 1 retrogene
retro_amel_164,
Canis familiaris ENSCAFG00000016893 ortholog_one2one 1 retrogene
retro_cfam_1488,
Choloepus hoffmanni ENSCHOG00000013760 ortholog_one2one 1 retrogene
retro_chof_1372,
Callithrix jacchus ENSCJAG00000007322 ortholog_one2one 2 retrogenes
retro_cjac_1175, retro_cjac_1922,
Echinops telfairi ENSETEG00000000758 ortholog_one2one 1 retrogene
retro_etel_709,
Felis catus ENSFCAG00000008944 ortholog_one2one 2 retrogenes
retro_fcat_1291, retro_fcat_574,
Homo sapiens ENSG00000159210 ortholog_one2one 1 retrogene
retro_hsap_2394,
Gorilla gorilla ENSGGOG00000025290 ortholog_one2one 1 retrogene
retro_ggor_1816,
Macropus eugenii ENSMEUG00000016638 ortholog_one2one 1 retrogene
retro_meug_663,
Mustela putorius furo ENSMPUG00000015356 ortholog_one2one 1 retrogene
retro_mputfur_1425,
Mus musculus ENSMUSG00000006058 ortholog_one2one 1 retrogene
retro_mmus_1050,
Nomascus leucogenys ENSNLEG00000002743 ortholog_one2one 1 retrogene
retro_nleu_2520,
Pongo abelii ENSPPYG00000008911 ortholog_one2one 1 retrogene
retro_pabe_2161,
Tarsius syrichta ENSTSYG00000004576 ortholog_one2one 1 retrogene
retro_tsyr_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_814 66.92 50.78
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2. retro_ocun_996 60.84 54.26
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Download FASTA sequences of all ENSOCUG00000009156 retrocopies