Parental gene: | Phgdh, ENSMUSG00000053398 |
| Aliases: | Phgdh, 3-PGDH, 3PGDH, 4930479N23, A10, PGAD, PGD, PGDH, SERA |
| Description: | 3-phosphoglycerate dehydrogenase [Source:MGI Symbol;Acc:MGI:1355330] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 3:98313169..98339990(-) |
>ENSMUSG00000053398
ATGGCCTTCGCAAATCTGCGCAAAGTACTCATCAGTGACAGCCTGGACCCCTGCTGCCGGAAGATCCTGCAAGATGGAGG
GCTGCAGGTGGTGGAGAAGCAGAACTTGAGCAAGGAGGAGCTGATAGCTGAACTCCAGGACTGTGAAGGCCTCATTGTCC
GGTCTGCTACTAAGGTCACTGCTGATGTCATCAATGCAGCAGAGAAGCTCCAGGTGGTGGGCAGGGCTGGCACAGGTGTG
GACAATGTGGATCTGGAGGCTGCCACGAGGAAGGGCATCCTAGTCATGAACACCCCCAACGGGAACAGCCTCAGTGCTGC
GGAGCTCACCTGTGGGATGATCATGTGCCTGGCCAGGCAGATTCCCCAGGCAACAGCTTCGATGAAAGATGGCAAATGGG
ACCGGAAGAAGTTCATGGGGACAGAACTGAACGGGAAGACACTGGGAATTCTTGGCCTCGGCAGAATTGGAAGAGAGGTG
GCCACCCGAATGCAATCCTTTGGAATGAAGACTGTAGGCTATGACCCCATCATCTCTCCTGAAGTCGCCGCCTCCTTTGG
TGTTCAGCAGCTGCCGCTGGAGGAGATCTGGCCTCTCTGTGACTTTATAACTGTCCATACCCCACTCCTGCCCTCTACCA
CAGGCTTGCTGAATGACAGCACCTTTGCTCAGTGCAAGAAAGGTGTGCGAGTAGTGAACTGTGCTCGAGGAGGCATTGTG
GATGAAGGTGCCCTGCTGCGTGCCCTGCAGTCTGGTCAGTGTGCTGGGGCTGCACTGGATGTGTTTACAGAAGAGCCACC
ACGGGACCGGGCCTTAGTGGACCACGAGAATGTCATCAGCTGTCCCCACCTGGGTGCCAGCACCAAGGAAGCCCAGAGCC
GCTGTGGGGAGGAAATCGCAGTCCAGTTTGTGGACATGGTGAAGGGGAAATCTCTAACAGGCGTTGTGAACGCCCAGGCC
CTCACCAGTGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCAATGGGCACGCTGATGCACGCCTGGGC
TGGCTCCCCTAAAGGGACCATCCAGGTGGTTACACAAGGAACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGCAG
TCATTGTCGGCCTTCTGAGAGAAGCATCTAAGCAGGCAGACGTGAACTTGGTGAACGCTAAGCTACTGGTGAAAGAGGCT
GGCCTCAATGTCACCACCTCCCACAACCCTGGGGTTCCAGGGGAGCAGGGTAGCGGGGAATGCCTCCTGACTGTGGCCCT
GGCAGGTGCTCCCTACCAAGCCGTGGGCTTGGTCCAGGGCACCACACCAATGCTGCAGATGCTCAACGGAGCTGTCTTCA
GACCAGAGGTGCCACTACGCAGGGGCCAACCCCTGCTCGTATTCCGGGCTCAGCCCTCCGACCCTGGGATGCTGCCCACT
ATGATTGGCCTCCTGGCAGAGGCGGGTGTACAGCTGCTGTCCTACCAAACCTCCATGGTGTCTGACGGAGAGCCCTGGCA
CGTCATGGGCCTGTCCTCCCTGCTGCCCAGCCTGGAAACATGGAAGCAGCATGTATTGGAGGCTTTCCAGTTCTGCTTCT
GA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 21 .05 RPM |
| SRP007412_cerebellum | 11 .94 RPM |
| SRP007412_heart | 0 .59 RPM |
| SRP007412_kidney | 5 .64 RPM |
| SRP007412_liver | 0 .08 RPM |
| SRP007412_testis | 7 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019916 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002986 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019328 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_545 | 86.52 | 59.66 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
| 2. | retro_mmus_1008 | 85.80 | 92.12 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 3. | retro_mmus_1223 | 92.72 | 59.29 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 4. | retro_mmus_1384 | 93.07 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 5. | retro_mmus_1708 | 90.88 | 69.79 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 6. | retro_mmus_1835 | 86.06 | 53.28 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 7. | retro_mmus_1892 | 93.66 | 67.73 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 8. | retro_mmus_2057 | 83.73 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 9. | retro_mmus_2169 | 94.00 | 99.81 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 10. | retro_mmus_2889 | 88.81 | 50.09 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 11. | retro_mmus_2979 | 96.27 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 12. | retro_mmus_3021 | 92.45 | 98.69 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 13. | retro_mmus_3176 | 92.54 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 14. | retro_mmus_3180 | 92.19 | 61.91 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 15. | retro_mmus_3217 | 98.84 | 97.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 16. | retro_mmus_3441 | 88.78 | 56.66 | Please wait, loading |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSMUSG00000053398 retrocopies