Parental gene:

Gpd1l, ENSMUSG00000050627

Aliases:Gpd1l, 2210409H23Rik, D9Ertd660e
Description:glycerol-3-phosphate dehydrogenase 1-like [Source:MGI Symbol;Acc:MGI:1289257]
Organism:Mouse (Mus musculus)
Coordinates:9:114899340..114933987(-)


>ENSMUSG00000050627
ATGGCAGCGGCGCCTCTGAAAGTGTGCATCGTGGGCTCGGGGAACTGGGGATCAGCTGTTGCAAAAATCATCGGCAGCAA
CGTGAAGACCCTGCAGAAATTCTCCTCCACCGTCAAGATGTGGGTCTTTGAGGAGACCGTGAACGGGAGGAAGCTGACAG
ACATAATCAACAATGACCACGAAAACGTGAAATATCTCCCAGGACACAAGCTGCCAGAGAATGTGGTCGCTGTCCCAAAC
CTCAGCGAAGCCGTGCAGGACGCGGACCTGCTGGTGTTCGTCATCCCTCACCAGTTCATCCACAAGATCTGCGATGAGAT
CACGGGCAGGGTGCCCGAGAAGGCCCTGGGGATCACCCTCATCAAGGGCATAGATGAGGGCCCCGACGGGCTGAAGCTAA
TCTCCGACATCATCCGAGAGAAGATGGGGATCGACATCAGTGTGCTGATGGGGGCCAACATCGCCAGTGAGGTCGCTGCG
GAGAAGTTCTGCGAGACCACCATTGGCAGCAAAGTGATGCAGAACGGCCTTCTCTTCAAAGAGCTGCTGCAGACGCCCAA
CTTCAGAATCACTGTGGTAGACGATGCAGACACCGTGGAGCTTTGCGGTGCTCTTAAGAACATTGTTGCTGTGGGAGCTG
GCTTCTGCGACGGCCTCCGCTGTGGGGACAACACCAAGGCGGCCGTCATACGCCTGGGCCTCATGGAAATGATCGCTTTC
GCCAAGATCTTCTGTAAGGGCCAGGTGTCCACGGCCACCTTCTTGGAGAGCTGCGGGGTGGCTGACCTCATCACCACCTG
CTACGGAGGGCGGAACCGCAGGGTGGCAGAGGCCTTCGCCAGGACTGGGAAGACCATCGAAGAGCTGGAGAAGGAGCTGC
TGAACGGGCAGAAGCTGCAGGGACCTCAGACCTCTGCGGAGGTGTACCGCATCCTCAGGCAGAAGGGGCTGCTGGACAAG
TTTCCCCTCTTCACTGCAGTGTATCAGATCTGCTATGAAGGCAGGCCTGTCACGCAGATGCTGTCCTGCCTGCAGAGCCA
CCCAGAGCACATCTGA

Library Parental gene expression (RPM)
SRP007412_brain 107 .73 RPM
SRP007412_cerebellum 64 .83 RPM
SRP007412_heart 63 .60 RPM
SRP007412_kidney 57 .88 RPM
SRP007412_liver 34 .68 RPM
SRP007412_testis 6 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009826 ortholog_one2one 1 retrogene
retro_btau_1671,
Choloepus hoffmanni ENSCHOG00000012633 ortholog_one2one 5 retrogenes
retro_chof_1033, retro_chof_306, retro_chof_340, retro_chof_620, retro_chof_724,
Loxodonta africana ENSLAFG00000013996 ortholog_one2many 1 retrogene
retro_lafr_101,
Microcebus murinus ENSMICG00000011060 ortholog_one2one 1 retrogene
retro_mmur_1205,
Oryctolagus cuniculus ENSOCUG00000010093 ortholog_one2one 2 retrogenes
retro_ocun_1529, retro_ocun_1588,
Otolemur garnettii ENSOGAG00000013243 ortholog_one2many 1 retrogene
retro_ogar_285,
Procavia capensis ENSPCAG00000016132 ortholog_one2one 1 retrogene
retro_pcap_316,
Rattus norvegicus ENSRNOG00000026455 ortholog_one2one 2 retrogenes
retro_rnor_2035, retro_rnor_2474,
Sus scrofa ENSSSCG00000021977 ortholog_one2one 1 retrogene
retro_sscr_154,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1348 71.51 100.00
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2. retro_mmus_2552 79.43 99.72
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3. retro_mmus_3695 81.87 51.57
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Download FASTA sequences of all ENSMUSG00000050627 retrocopies