Parental gene:

Pphln1, ENSMUSG00000036167

Aliases:Pphln1, CR, HSPC206, HSPC232
Description:periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029]
Organism:Mouse (Mus musculus)
Coordinates:15:93398349..93491913(+)


>ENSMUSG00000036167
ATGTGGTCTGAGGGACGCTATGACTACGACCGACTTCCGAGAGAACGCGTGCCTCCCCGGAGCCATCCCAGTGATGGCTA
CCATAGAGTAGTTAATGTTGTGCCAAAGAGACCACCTCTGCTAGACAAGAGACCACCTCTGCTAGACAAGAGACCACCTC
TGCTAGCCAGACCTGATGAAGGAGGCTACAGTAGATATTACAGTCATGTTGATTGCCGAGTATGTGACGAGGGCCGCAGT
TTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGTGGAGATGAATCTGGCTACAGATGGCTAAGAGATGATCATTCCAC
AAGCCGGCAGCCTGACTACAGGGACATGAGAGACGGCTTCAGAAGAAAGAGTTTCTACTCTTCACATTATTCGAGAGATC
GGTCTCCCCATAAAAGGGACGCTCCCTTCTTCAGAGAATCCCCTGTCGGCCGGAAGGACTCCCCACACAGCAGATCCGGC
TCCAGTGTCAGCAGCAGAAGCTATTCTCCAGAGCGAAGCAGGACTCACTCCTTCCATCAGTCTCAGCATAGAAAGTCCTC
GCGTGTCGGTGCTTCCTACAAACGACAGAATGAAGCAATTCGTGGAAGAGGTAAAGAGAGATCCATCCAGTCAGTGAAAA
CCTCGAGAGATGCGTCACCCTCAAGTTCCTCAGCAGTTGCTTCATCCAAGGCGTTAGACAAACCCAGCAGGCTAACTGAG
AAGGAACTTGCTGAGGCTGAAAGCAAGTGGGCTAATGAAACACTAGAGAAGTCAGACGAAAGTAACTTGGCTGAAATGAA
TGAGTTTGAGGCGGGATCCACGGCACCCTTATTTATTGACCAGACAGAAGAACCCGAGTCAAACACAGTAGATGGTACAG
AACTGTATGAAGACAGCCAGCTCAGCAACCGCTCTAAAGCCATTGCCTCGAAAACCAAAGAGATTGAGCAGGTTTACCGA
CAAGACTGCGAGACTTTCGGGATGGTGGTGAAAATGCTGATTGAAAAAGATCCCTCATTAGAAAAGTCTGTCCAGTTTGC
ACTGAGGCAGAACTTACACGAGATAGGTGAGCGCTGCGTGGAAGAGCTCAAGCGTTTCATTACTGAGTATGACAACTCTG
CTCAGGACTTTGGAGACCCCTTTTAG

Library Parental gene expression (RPM)
SRP007412_brain 30 .37 RPM
SRP007412_cerebellum 25 .23 RPM
SRP007412_heart 15 .60 RPM
SRP007412_kidney 21 .46 RPM
SRP007412_liver 12 .23 RPM
SRP007412_testis 52 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010693 ortholog_one2many 1 retrogene
retro_chof_1231,
Callithrix jacchus ENSCJAG00000017726 ortholog_one2many 1 retrogene
retro_cjac_1547,
Cavia porcellus ENSCPOG00000012266 ortholog_many2many 2 retrogenes
retro_cpor_744, retro_cpor_745,
Dasypus novemcinctus ENSDNOG00000002007 ortholog_one2many 1 retrogene
retro_dnov_1790,
Equus caballus ENSECAG00000016067 ortholog_one2many 1 retrogene
retro_ecab_209,
Otolemur garnettii ENSOGAG00000004012 ortholog_many2many 2 retrogenes
retro_ogar_1387, retro_ogar_2103,
Tarsius syrichta ENSTSYG00000010740 ortholog_one2many 1 retrogene
retro_tsyr_2044,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_79 54.36 91.99
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2. retro_mmus_1657 84.70 61.77
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3. retro_mmus_3561 65.78 76.79
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Download FASTA sequences of all ENSMUSG00000036167 retrocopies