Parental gene:

Actb, ENSMUSG00000029580

Aliases:Actb, Actx, E430023M04Rik, beta-actin
Description:actin, beta [Source:MGI Symbol;Acc:MGI:87904]
Organism:Mouse (Mus musculus)
Coordinates:5:142903114..142906754(-)


>ENSMUSG00000029580
ATGGATGACGATATCGCTGCGCTGGTCGTCGACAACGGCTCCGGCATGTGCAAAGCCGGCTTCGCGGGCGACGATGCTCC
CCGGGCTGTATTCCCCTCCATCGTGGGCCGCCCTAGGCACCAGGGTGTGATGGTGGGAATGGGTCAGAAGGACTCCTATG
TGGGTGACGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATTGAACATGGCATTGTTACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCACCCTGTGCTGCTCACCGA
GGCCCCCCTGAACCCTAAGGCCAACCGTGAAAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACG
TAGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACAGGCATTGTGATGGACTCCGGAGACGGGGTCACC
CACACTGTGCCCATCTACGAGGGCTATGCTCTCCCTCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGA
CTACCTCATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATCGTGCGTGACATCAAAG
AGAAGCTGTGCTATGTTGCTCTAGACTTCGAGCAGGAGATGGCCACTGCCGCATCCTCTTCCTCCCTGGAGAAGAGCTAT
GAGCTGCCTGACGGCCAGGTCATCACTATTGGCAACGAGCGGTTCCGATGCCCTGAGGCTCTTTTCCAGCCTTCCTTCTT
GGGTATGGAATCCTGTGGCATCCATGAAACTACATTCAATTCCATCATGAAGTGTGACGTTGACATCCGTAAAGACCTCT
ATGCCAACACAGTGCTGTCTGGTGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATTACTGCTCTG
GCTCCTAGCACCATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCTGTGTGGATCGGTGGCTCCATCCTGGC
CTCACTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAGTCCGGCCCCTCCATCGTGCACCGCAAGT
GCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain 922 .02 RPM
SRP007412_cerebellum 706 .77 RPM
SRP007412_heart 464 .18 RPM
SRP007412_kidney 679 .61 RPM
SRP007412_liver 437 .32 RPM
SRP007412_testis 567 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006601 ortholog_one2one 1 retrogene
retro_amel_11,
Cavia porcellus ENSCPOG00000013467 ortholog_one2one 1 retrogene
retro_cpor_60,
Homo sapiens ENSG00000075624 ortholog_one2one 6 retrogenes
retro_hsap_1563, retro_hsap_1894, retro_hsap_3386, retro_hsap_38, retro_hsap_4204, retro_hsap_518,
Gallus gallus ENSGALG00000009621 ortholog_one2one 1 retrogene
retro_ggal_4,
Gorilla gorilla ENSGGOG00000001133 ortholog_one2one 18 retrogenes
retro_ggor_1177, retro_ggor_1188, retro_ggor_1211, retro_ggor_1266, retro_ggor_1297, retro_ggor_1332, retro_ggor_1387, retro_ggor_1622, retro_ggor_1825, retro_ggor_1890, retro_ggor_2292, retro_ggor_2774, retro_ggor_2817, retro_ggor_3002, retro_ggor_352, retro_ggor_405, retro_ggor_44, retro_ggor_477,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Meleagris gallopavo ENSMGAG00000003960 ortholog_one2one 2 retrogenes
retro_mgal_5, retro_mgal_6,
Macaca mulatta ENSMMUG00000011153 possible_ortholog 1 retrogene
retro_mmul_135,
Mustela putorius furo ENSMPUG00000016612 ortholog_one2one 2 retrogenes
retro_mputfur_440, retro_mputfur_461,
Mus musculus ENSMUSG00000025228 other_paralog 1 retrogene
retro_mmus_2686,
Mus musculus ENSMUSG00000062825 within_species_paralog 7 retrogenes
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Ornithorhynchus anatinus ENSOANG00000007716 ortholog_one2one 2 retrogenes
retro_oana_4, retro_oana_8,
Otolemur garnettii ENSOGAG00000008348 ortholog_one2many 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000017336 ortholog_one2one 23 retrogenes
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
Rattus norvegicus ENSRNOG00000034254 ortholog_one2one 10 retrogenes
retro_rnor_1324, retro_rnor_1386, retro_rnor_1799, retro_rnor_2371, retro_rnor_2714, retro_rnor_2856, retro_rnor_2978, retro_rnor_351, retro_rnor_459, retro_rnor_935,
Sarcophilus harrisii ENSSHAG00000012694 ortholog_one2one 4 retrogenes
retro_shar_120, retro_shar_370, retro_shar_62, retro_shar_93,
Sus scrofa ENSSSCG00000007585 ortholog_one2one 1 retrogene
retro_sscr_548,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Ictidomys tridecemlineatus ENSSTOG00000014797 ortholog_one2one 3 retrogenes
retro_itri_149, retro_itri_1881, retro_itri_4,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_283 92.80 100.00
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2. retro_mmus_761 87.02 54.93
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3. retro_mmus_1613 81.39 95.20
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4. retro_mmus_1677 79.84 64.27
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5. retro_mmus_2880 92.63 57.60
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6. retro_mmus_3411 63.24 75.09
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7. retro_mmus_3532 76.58 90.17
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Download FASTA sequences of all ENSMUSG00000029580 retrocopies