Parental gene:

Depdc1a, ENSMUSG00000028175

Aliases:Depdc1a, 5830484J08Rik, Depdc1
Description:DEP domain containing 1a [Source:MGI Symbol;Acc:MGI:1923381]
Organism:Mouse (Mus musculus)
Coordinates:3:159495432..159529955(+)


>ENSMUSG00000028175
ATGGAGCGTCAGGGTGCTCCTCTTGGACCTTACCGGGCCACCAAGCTGTGGAATGAAGTAACCACATCTTTTCGAGTAGG
AATGCCTTTAAGAAAACATAGACAACATTTAAAAAAATATAGCAATTGTTTCACTGCAGTTGAAGCTATAGATTGGCTTT
ATGATCTGTTAAGAAGTAATAGTAATTTTGGTCCTGAAGTTACAAGACAACAGACTATTCAACTATTGAGAAAATTTCTT
AAGAATCATGTGATTGAAGATATCAAAGGTAGATGGGGATCGGAAAGCCTTGATGACAACAATCAACTATTCAGATTTCC
TGCAACTTCTCCACTTAAAACTTTTCCACAAAGACATACAGAAATCAAGAAAACCAACACAGAGTACTTTTCCAAAGACA
AAGATGGTATTTTTAAATTACGAAACTTATCTCAAAAAACTTCTAAGAAGCGTGGATTACATTTCTCTCAGGAAAATACA
GAAAAGATAAATCATGAAAGAATAACCAATGAAGATCTAGAAATTGCACCTGACAACCAAGAAATAAGCCAGGAAGATGT
TGAAGAAGTTTGGAGATACGTTATTATGATATACCTGCAAACCATTTTAAGTTTGCCATCCATAGAAGAACTCTTAAACC
CAAACCAAGTAATTCCTCAATATATAATGTACAACATGGCCAACACAAGTAAGCATGGAGTGGTCATACTACAAGACAAA
TCAGACGATCTTCCACATTGGGTTTTATCTGCAATGAAGTGCCTAGCAAATTGGCCAAGAAGTAATGACACCAATAATCT
AACTTATGTTGGATTTGAACGTGATGTATTCAAAACAATTGCAGATTATTTTCTAAATCTCCCTGAACCTCTACTTACAT
TTGAATATTATGAATTATTTGTGAACATTTTGGTTGTTTGTGGCTACATCACAGTTTCAGATAGAACAAGTGGAATACAT
AAAATACAAGATGATCCACGATCTTCAAAAATCCATGATTTAAGCAATTTGAATTCCTTCAAATCAACTGAGTGTCTTCT
TCTCAGTCTGCTTTACAAAGACAAAAGCAATGAAGAGTTGGATTCTACTAAAAGACTACAAAGAAATGATCAAGGATTTC
AAGAAAGATGTGCCAAGAAAATGCAGCTAGATAATTTAAGAAACAGAAGAGCTAGTGCTAATGACATAATGGGAGGAAGC
TGTCATAATTTAATAGGCTTAAGTAATACAAATGCCCTGTCCTCTAACATCAAACCAAGGTGCTCTTCTTTGGAAGGAAT
TGTAGATAGGCCAGTGAATTCAAGTGAAAAGAAGTCCAGTATCTTCTACCAGTCTGTTCTGAACATAGAAGAACAAAATA
GTAAGCAATCGTTAGTGTCTGCACCCAAACAGACACCCCTATTTAATCTTCACTCAGATGAAAATGCTCAGCAGCCACAC
TGTGTTGGTTTTAACAGAACCTCTGCTTTGACTGTTCAAGACCAAGAAGAGTTATGTAATGAAAAGTATAAGTCAAAACA
GCTTTGTAGATCTCAGAGTTTACTTTTAAGAAGTAGTACAAGACAGAATAGTTGTATCAATAAACCAGTGGCTGAAATTA
TAATGAAACCAAATGTTGGACAAGGGAGTACAAGTGAGCTCGGAGAGTCTAGTACCACAATCAATAAAAGACTGTGCAAA
AGCACCATAGAACTTTCAGAGAAATCTTTACCTCCAGCTGCTTCTGTGTTGACTGGCACACAAAGTTTGCTGCAACCTCA
CTTAGAGAGGGTTGCCATCAATGCTCTACAGTTATGTTGTTTGTTACTTCCCCCACCAAATCGTAGAAAGCTTCAACTCT
TAATGCGCATGATTTCTAGAATGAGTCAAAATGTTGATATGCCCAAACTTCATGAACAAATAGGTACAAGATCATTGATG
ATAAATACTTTTTCTCGATGTGTACTATGTTGTGCTGAAGAAGTGGATCTTGATGAGCTTCTGGCTTCAAGATTAGTTTC
TTTCCTAATGGATCATCATCAGGAAATTCTTCAAGTACCCACTTATTTACAAGCTGCAGTGGAGAAACATCTTGACTACA
TTAAAAAGGGCAATGTTAAAAATCATGGAGATGGACTAGTTGTTCCTTTGCCAACATATTCTTACTGTAAACAGATTAGT
GCTAAAGAATTTGATGAACAGAAAATTTCAACTTCCCAAGCTGCAATTGCAGAACTTTTGGAGAATATTGTCAGAAGTAA
AAGCTTGTCTCTAAAGGAGAAAAGAAGAAAATTGAAACAGTTTCAGAAGGAATACCCCTTGATATATCAGAAAAGATTTC
CAACCACTGAGAGTGAAGCAGCACTTTTTGATGATAAACCTACAATCAAGCAACCGATGCTGAATTTAAGAAACCCCAAG
CTTCACAGTCTGCGTTACTGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .05 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .03 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000013839 ortholog_one2one 1 retrogene
retro_cpor_735,
Homo sapiens ENSG00000024526 ortholog_one2one 2 retrogenes
retro_hsap_1545, retro_hsap_4206,
Gorilla gorilla ENSGGOG00000016316 ortholog_one2many 1 retrogene
retro_ggor_1176,
Macaca mulatta ENSMMUG00000017766 ortholog_one2one 1 retrogene
retro_mmul_1176,
Nomascus leucogenys ENSNLEG00000009334 ortholog_one2one 1 retrogene
retro_nleu_2931,
Otolemur garnettii ENSOGAG00000000934 ortholog_one2one 1 retrogene
retro_ogar_1907,
Pongo abelii ENSPPYG00000001248 ortholog_one2one 1 retrogene
retro_pabe_3441,
Pan troglodytes ENSPTRG00000000847 ortholog_one2one 2 retrogenes
retro_ptro_1041, retro_ptro_2855,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_3028 99.38 100.00
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Download FASTA sequences of all ENSMUSG00000028175 retrocopies