Parental gene:

Nup50, ENSMUSG00000016619

Aliases:Nup50, 1700030K07Rik, AI413123, Npap60
Description:nucleoporin 50 [Source:MGI Symbol;Acc:MGI:1351502]
Organism:Mouse (Mus musculus)
Coordinates:15:84923427..84942955(+)


>ENSMUSG00000016619
ATGGCGAAGAGAGTTGCGGAGAAGGAGTTGACTGACAGGAACTGGGATGAGGAAGACGAAGTTGAAGAGATGGGAACATT
CTCAGTGGCCAGTGAGGAAGTCATGAAGAACAGAGCCGTAAAGAAGGCAAAGCGCAGAAACGTTGGATTTGAATCTGATA
GCGGAGGAGCCTTTAAAGGTTTCAAAGGTTTGGTTGTGCCTTCTGGAGGAGGAGGGTTTTCTGGATTTGGTGGCTCTGGA
GGAAAGCCTCTGGAAGGACTGACAAATGGAAACAGCACAGACAATGCCACGCCCTTCTCCAATGTAAAGACAGCAGCAGA
GCCCAAGGCAGCCTTTGGTTCTTTTGCTGTGAATGGCCCTACTACCTTGGTGGATAAAAAGATTTCAAGTCCCAAATGCA
ATAACAGCAATCAGCCGCCCTCCTCCGGCCCTGCTTCCAGTACCGCCTGCCCTGGGAATGCCTATCACAAGCAGCTGGCT
GGCTTGAACTGCTCCGTCCGCGATTGGATAGTGAAGCACGTGAACACAAACCCGCTTTGTGACCTGACTCCCATTTTTAA
AGACTATGAGAGATACTTGGCGACGATCGAGAAGCAGCTTGAGAATGGAGGCGGCAGCAGTTCTGAGAGCCAGACAGACA
GGGCGACGGCTGGAATGGAGCCTCCTTCCCTTTTTGGTTCAACAAAACTACAGCAAGAGTCACCATTTTCATTTCATGGC
AACAAAGCGGAGGACACATCTGAAAAGGTGGAGTTTACAGCAGAAAAGAAATCGGACGCAGCACAAGGAGCAACAAGTGC
CTCGTTTAGTTTCGGCAAGAAAATTGAGAGCTCGGCTTTGGGCTCGTTAAGCTCTGGCTCCCTAACTGGGTTTTCATTCT
CTGCTGGAAGCTCCAGCTTGTTTGGTAAAGATGCTGCCCAGAGTAAAGCAGCCTCTTCGCTGTTCTCTGCTAAAGCATCC
GAGAGTCCGGCAGGAGGCGGCAGCAGCGAGTGCAGAGATGGTGAAGAAGAGGAGAATGACGAGCCACCCAAGGTAGTGGT
GACCGAAGTAAAGGAAGAGGATGCTTTCTACTCCAAAAAATGTAAACTATTTTACAAGAAAGACAACGAATTTAAAGAGA
AGGGTGTGGGGACCCTGCATTTAAAACCCACAGCAACTCAGAAGACCCAGCTCTTGGTGCGGGCAGACACCAACCTAGGC
AACATACTGCTGAATGTTCTGATCGCCCCCAACATGCCGTGCACCCGGACAGGAAAGAACAACGTCCTTATCGTCTGTGT
CCCCAACCCCCCACTCGATGAGAAGCAGCCCACTCTCCCGGCCACCATGCTGATCCGGGTGAAGACGAGCGAGGATGCCG
ATGAATTGCACAAGATTTTACTGGAGAAAAAGGATGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain 37 .05 RPM
SRP007412_cerebellum 49 .54 RPM
SRP007412_heart 21 .73 RPM
SRP007412_kidney 48 .74 RPM
SRP007412_liver 43 .94 RPM
SRP007412_testis 174 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016242 possible_ortholog 1 retrogene
retro_cjac_4080,
Homo sapiens ENSG00000093000 possible_ortholog 3 retrogenes
retro_hsap_1429, retro_hsap_3301, retro_hsap_3434,
Microcebus murinus ENSMICG00000006840 ortholog_one2many 1 retrogene
retro_mmur_534,
Nomascus leucogenys ENSNLEG00000013154 possible_ortholog 2 retrogenes
retro_nleu_1359, retro_nleu_1844,
Otolemur garnettii ENSOGAG00000002320 ortholog_one2many 1 retrogene
retro_ogar_942,
Pongo abelii ENSPPYG00000011928 possible_ortholog 1 retrogene
retro_pabe_2723,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1905 86.17 66.31
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Download FASTA sequences of all ENSMUSG00000016619 retrocopies