Parental gene: | NUP50, ENSG00000093000 |
| Aliases: | NUP50, NPAP60, NPAP60L |
| Description: | nucleoporin 50kDa [Source:HGNC Symbol;Acc:8065] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 22:45559721..45583892(+) |
>ENSG00000093000
ATGGCCAAAAGAAATGCCGAGAAGGAACTGACAGATAGGAATTGGGATCAAGAAGATGAAGCTGAAGAGGTGGGAACATT
CTCCATGGCCAGTGAGGAAGTCTTGAAGAATAGAGCCATAAAGAAAGCAAAGCGCAGAAATGTTGGATTTGAATCTGACA
CTGGAGGAGCCTTTAAAGGTTTTAAAGGTTTGGTGGTACCTTCTGGAGGAGGACGCTTTTCTGGATTTGGTAGTGGCGCT
GGAGGGAAGCCTTTGGAAGGACTGTCGAATGGAAACAACATAACCAGTGCCCCTCCCTTCGCCAGTGCAAAGGCAGCGGC
AGATCCCAAGGTAGCCTTTGGTTCTCTTGCTGCAAATGGCCCTACCACCTTGGTTGATAAAGTTTCAAATCCCAAAACTA
ATGGGGACAGTCAGCAGCCCTCCTCCTCTGGCCTTGCTTCCAGTAAAGCTTGTGTCGGAAATGCCTATCACAAGCAGTTG
GCCGCCTTGAACTGCTCCGTGCGGGATTGGATAGTGAAGCACGTGAATACAAACCCCCTCTGTGATCTGACACCTATCTT
TAAAGACTATGAGAAATATTTAGCAAACATTGAACAGCAACACGGGAACAGTGGCAGGAATTCTGAAAGTGAATCTAACA
AAGTGGCAGCTGAAACACAGTCTCCTTCCCTTTTTGGCTCAACAAAATTACAGCAAGAGTCAACGTTTTTGTTTCATGGC
AACAAAACTGAAGATACACCTGACAAGAAGATGGAGGTGGCATCTGAAAAGAAAACGGACCCATCATCACTAGGAGCGAC
AAGTGCCTCATTTAATTTCGGCAAGAAAGTTGATAGCTCTGTTTTGGGCTCATTAAGCTCTGTCCCCCTGACTGGATTTT
CTTTCTCCCCTGGAAACTCCAGTTTATTTGGCAAAGATACTACCCAGAGTAAACCAGTCTCTTCACCATTTCCCACTAAA
CCATTGGAGGGCCAAGCAGAAGGTGACAGTGGTGAATGCAAAGGTGGAGATGAAGAAGAGAATGATGAGCCACCCAAAGT
AGTAGTTACCGAAGTAAAAGAAGAAGATGCTTTTTACTCCAAAAAGTGTAAACTGTTTTACAAGAAAGACAATGAGTTTA
AAGAGAAAGGCATAGGTACTCTGCATTTAAAACCTACAGCAAATCAGAAGACACAGCTTTTGGTGCGGGCAGACACCAAT
TTAGGCAACATATTGCTGAACGTTCTGATTCCACCCAATATGCCATGTACGCGAACAGGGAAGAATAACGTTCTTATCGT
CTGTGTTCCAAATCCACCAATTGACGAGAAGAATGCCACCATGCCAGTCACCATGTTGATTCGGGTAAAAACCAGCGAGG
ATGCAGACGAGTTGCACAAAATTTTACTGGAGAAAAAGGATGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 83 .75 RPM |
| bodymap2_adrenal | 77 .48 RPM |
| bodymap2_brain | 46 .93 RPM |
| bodymap2_breast | 45 .62 RPM |
| bodymap2_colon | 42 .13 RPM |
| bodymap2_heart | 19 .20 RPM |
| bodymap2_kidney | 57 .37 RPM |
| bodymap2_liver | 42 .42 RPM |
| bodymap2_lung | 52 .48 RPM |
| bodymap2_lymph_node | 72 .22 RPM |
| bodymap2_ovary | 66 .51 RPM |
| bodymap2_prostate | 42 .47 RPM |
| bodymap2_skeletal_muscle | 22 .03 RPM |
| bodymap2_testis | 78 .41 RPM |
| bodymap2_thyroid | 50 .60 RPM |
| bodymap2_white_blood_cells | 199 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016242 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000006840 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000016619 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000013154 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002320 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011928 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1429 | 92.13 | 100.00 | Please wait, loading  |
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| 2. | retro_hsap_3301 | 93.55 | 98.93 | Please wait, loading |
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| 3. | retro_hsap_3434 | 96.15 | 99.79 | Please wait, loading |
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Download FASTA sequences of all ENSG00000093000 retrocopies