Parental gene:

Fam50a, ENSMUSG00000001962

Aliases:Fam50a, D0HXS9928E, XAP-5
Description:family with sequence similarity 50, member A [Source:MGI Symbol;Acc:MGI:1351626]
Organism:Mouse (Mus musculus)
Coordinates:X:74313032..74320149(+)


>ENSMUSG00000001962
ATGGCCCAGTACAAGGGCGCTGCAAGCGAGGCGGGACGCGCCATGCACCTAATGAAGAAGAGGGAGAAGCAGCGTGAGCA
AATGGAGCAGATGAAGCAGAGGATTGCAGAGGAGAACATAATGAAATCTAACATTGACAAGAAATTCTCTGCACACTATG
ATGCTGTGGAAGCAGAGCTCAAGTCCAGTACTGTGGGTCTTGTGACTCTGAATGACATGAAGGCCAAACAGGAGGCACTG
GTGAAGGAGCGAGAGAAACAGCTGGCAAAAAAGGAGCAGTCAAAGGAGCTACAGCTGAAACTAGAGAAGCTTCGAGAGAA
GGAGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCAGCCTGTCCTTCACCTTGGAGGAAGAGGAGGAGGGAGTTGAAGAGG
AGGAAGAGATGGCTATGTACGAGGAGGAACTGGAGAGGGAAGAGATCACCACAAAGAAAAAGAAATTGGGGAAGAACCCT
GATGTGGACACAAGCTTCTTGCCTGACCGGGACCGGGAGGAGGAGGAGAATCGGCTTCGGGAAGAGCTGCGCCAGGAGTG
GGAAGCCAAGCAGGAAAAAATCAAGAGTGAAGAGATTGAAATCACCTTTAGTTACTGGGATGGCTCTGGGCACCGGCGCA
CAGTTAAGATGAAGAAAGGCAACACGATGCAGCAGTTCCTACAGAAAGCACTAGAGATCTTGCGGAAAGACTTCAGTGAA
CTCAGGTCAGCAGGGGTGGAACAGCTCATGTACATCAAGGAGGATTTAATCATCCCCCATCATCACAGCTTCTATGACTT
CATCGTTACCAAGGCACGAGGAAAAAGTGGGCCACTCTTCAACTTCGACGTTCATGATGATGTACGACTGCTCAGTGATG
CCACTGTGGAGAAGGATGAGTCACATGCAGGCAAAGTAGTGCTAAGGAGCTGGTATGAGAAGAACAAGCACATTTTTCCT
GCCAGTCGCTGGGAGCCCTATGACCCAGAAAAGAAATGGGACAAGTACACGATCCGGTGA

Library Parental gene expression (RPM)
SRP007412_brain 24 .93 RPM
SRP007412_cerebellum 31 .39 RPM
SRP007412_heart 21 .45 RPM
SRP007412_kidney 42 .68 RPM
SRP007412_liver 25 .72 RPM
SRP007412_testis 5 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000273 ortholog_one2one 1 retrogene
retro_amel_15,
Felis catus ENSFCAG00000011399 ortholog_one2one 1 retrogene
retro_fcat_100,
Homo sapiens ENSG00000071859 ortholog_one2one 1 retrogene
retro_hsap_94,
Loxodonta africana ENSLAFG00000008766 ortholog_one2one 1 retrogene
retro_lafr_43,
Myotis lucifugus ENSMLUG00000022234 ortholog_one2many 1 retrogene
retro_mluc_7,
Mustela putorius furo ENSMPUG00000009476 ortholog_one2many 1 retrogene
retro_mputfur_145,
Nomascus leucogenys ENSNLEG00000014266 ortholog_one2one 1 retrogene
retro_nleu_109,
Rattus norvegicus ENSRNOG00000045790 ortholog_one2many 1 retrogene
retro_rnor_214,
Sorex araneus ENSSARG00000006465 ortholog_one2one 1 retrogene
retro_sara_554,
Sus scrofa ENSSSCG00000025303 ortholog_one2one 1 retrogene
retro_sscr_56,
Ictidomys tridecemlineatus ENSSTOG00000004448 ortholog_one2one 10 retrogenes
retro_itri_105, retro_itri_1563, retro_itri_1688, retro_itri_1691, retro_itri_1693, retro_itri_1758, retro_itri_1760, retro_itri_1762, retro_itri_1780, retro_itri_184,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_103 79.06 100.00
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Download FASTA sequences of all ENSMUSG00000001962 retrocopies