Parental gene:

FAM50A, ENSFCAG00000011399

Aliases:None
Description:family with sequence similarity 50, member A [Source:HGNC Symbol;Acc:18786]
Organism:Cat (Felis catus)
Coordinates:X:125095536..125102445(+)


>ENSFCAG00000011399
ATGGCTCAGTACAAGGGCGCCGCGAGCGAGGCGGGCCGCGCCATGCACCTGATGAAGAAGCGGGAGAAGCAGCGCGAGCA
GATGGAGCAGATGAAGCAACGGCTGCCACAGGAGAACATAATGAAATCTAACATCGACAAGAAGTTCTCTGCGCACTACG
ACGCCGTGGAGGCGGAGCTCAAGTCCAGCACCGTCGGTCTCGTGACCCTGAATGACATGAAGGCCAAGCAAGAGGCGCTG
GTGAAAGAGAGGGAGAAGCAGCTGGCCAAGAAAGAGCAGTCGAAGGAGCTGCAATTGAAGCTGGAGAAGCTACGAGAGAA
GGAGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCAGCCTGTCCTTCACTCTGGAGGAAGAGGAGGAGGCAGGTGACGAGG
ATGAGGAGGTGGCTGTGTATGAGGAGGAGCTGGAGAGGGAAGAGATCACTGCAAAGAAGAGGAAATTGGGGAAGAACCCA
GATGTGGACACGAGCTTCCTGCCCGACCGAGACCGTGAGGAAGAGGAGAACCGGCTCCGGGAAGAGCTGCGGCAGGAGTG
GGAGGCCAAGCAGGAGAAGATCAAGAGTGAGGAGATCGAAATCACCTTCAGTTACTGGGATGGCTCCGGCCACCGGCGGA
CGGTCAAGATGAAAAAGGGCAACACGATGCAGCAATTCCTGCAGAAGGCCCTTGAAATCCTGCGCAAAGACTTCAGCGAG
CTCAGGTCAGCGGGGGTGGAGCAGCTCATGTACATCAAGGAGGACCTGATCATCCCCCACCACCACAGCTTCTATGACTT
CATTGTCACCAAGGCCCGAGGGAAGAGTGGGCCACTCTTTAATTTCGACGTTCACGATGACGTGCGGCTGCTCAGTGACG
CGACCGTGGAGAAGGATGAGTCACACGCGGGCAAGGTGGTGCTGCGGAGCTGGTACGAAAAGAACAAGCACATCTTCCCT
GCCAGCCGCTGGGAGCCCTACGACCCCGAGAAAAAGTGGGACAAGTACACGGTGAGC

Library Parental gene expression (RPM)
SRP017611_brain 25 .71 RPM
SRP017611_kidney 34 .73 RPM
SRP017611_liver 12 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000273 ortholog_one2one 1 retrogene
retro_amel_15,
Homo sapiens ENSG00000071859 ortholog_one2one 1 retrogene
retro_hsap_94,
Loxodonta africana ENSLAFG00000008766 ortholog_one2one 1 retrogene
retro_lafr_43,
Myotis lucifugus ENSMLUG00000022234 ortholog_one2many 1 retrogene
retro_mluc_7,
Mustela putorius furo ENSMPUG00000009476 ortholog_one2many 1 retrogene
retro_mputfur_145,
Mus musculus ENSMUSG00000001962 ortholog_one2one 1 retrogene
retro_mmus_103,
Nomascus leucogenys ENSNLEG00000014266 ortholog_one2one 1 retrogene
retro_nleu_109,
Rattus norvegicus ENSRNOG00000045790 ortholog_one2many 1 retrogene
retro_rnor_214,
Sorex araneus ENSSARG00000006465 ortholog_one2one 1 retrogene
retro_sara_554,
Sus scrofa ENSSSCG00000025303 ortholog_one2one 1 retrogene
retro_sscr_56,
Ictidomys tridecemlineatus ENSSTOG00000004448 ortholog_one2one 10 retrogenes
retro_itri_105, retro_itri_1563, retro_itri_1688, retro_itri_1691, retro_itri_1693, retro_itri_1758, retro_itri_1760, retro_itri_1762, retro_itri_1780, retro_itri_184,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_100 78.99 99.71
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Download FASTA sequences of all ENSFCAG00000011399 retrocopies