Parental gene:

SRSF6, ENSMODG00000003107

Aliases:None
Description:serine/arginine-rich splicing factor 6 [Source:HGNC Symbol;Acc:10788]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:386012899..386016949(-)


>ENSMODG00000003107
ATGCCGCGCGTCTACATTGGGCGCCTCAGCTACCATGTCCGCGAGAAAGACATCCAGCGTTTTTTCAGTGGCTACGGGCG
CCTGCTGGAAGTCGACCTGAAAAACGGGTACGGCTTTGTGGAGTTCGAGGACTCCCGCGACGCGGATGATGCCGTTTACG
AGCTGAACGGCAAGGACTTGTGCGGAGAACGAGTGATCGTGGAGCACGCCCGGGGCCCCCGCCGGGACCGCGACGGCTAT
AGCTACGGCAGCCGCAGTGGTGGTGGAGGAGGATACAGCAGTCGAAGAGCCACTGGCAGAGATAAATATGGACCACCTGT
TCGTACAGAGTACAGACTGATTGTAGAAAATCTTTCTAGTCGTTGCAGTTGGCAAGATTTAAAGGATTTCATGAGACAAG
CTGGAGAAGTAACATATGCAGATGCTCACAAAGAACGTACAAATGAAGGTGTAATTGAATTTCGTTCCTATTCTGACATG
AAACGTGCTTTAGATAAATTGGATGGCACAGAAATAAATGGCAGAAATATAAGACTAATTGAAGATAAACCACGGACAAG
CCATAGGAGATCCTATTCTGGAAGCAGATCTAGATCCAGGTCTAGGCGAAGGTCTCGAAGTAGGAGTCGAAGAAGCAGCC
GAAGTAGATCCCGTAGTGCCTCAAAAAGTCGTTCCAGATCCAAATCTAGGTCTCGAAGCAAAGATCATTCACGTTCCCGA
TCAAAAGGCAGGAAGTCTAGATCAAAGAGCAAATCTAAGGCCAAGTCTGATCGAGGCTCTAGATCTCGTAGCAGATCCAA
GGCAAAGTCGGAGAAATCACGTAGTAGGTCCAGGTCTCCATCTCCCAAAGAAAATGGAAAAGGAGAAACAAAGTCAAAAT
CAAGATCAAGAAGCCAGTCTCACTCCAATTCTCCACAACCTCCACCACCATCAAAGGCTCGTTCTGAGTCTCCTCCAGTT
AAAAGGGCTACATCAGTATCTCACTCTAGATCTCGGTCACGGTCAAGATCTAGTTCAAGAGATTAA

Library Parental gene expression (RPM)
SRP007412_brain 170 .33 RPM
SRP007412_cerebellum 190 .00 RPM
SRP007412_heart 147 .52 RPM
SRP007412_kidney 294 .97 RPM
SRP007412_liver 252 .25 RPM
SRP007412_testis 183 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002061 ortholog_one2one 1 retrogene
retro_acar_191,
Canis familiaris ENSCAFG00000009289 ortholog_one2one 1 retrogene
retro_cfam_392,
Echinops telfairi ENSETEG00000006221 ortholog_one2one 1 retrogene
retro_etel_1261,
Homo sapiens ENSG00000124193 ortholog_one2one 1 retrogene
retro_hsap_1809,
Gorilla gorilla ENSGGOG00000009808 ortholog_one2many 1 retrogene
retro_ggor_2176,
Monodelphis domestica ENSMODG00000008669 other_paralog 1 retrogene
retro_mdom_289,
Monodelphis domestica ENSMODG00000011362 within_species_paralog 1 retrogene
retro_mdom_934,
Nomascus leucogenys ENSNLEG00000006524 ortholog_one2one 1 retrogene
retro_nleu_1294,
Oryctolagus cuniculus ENSOCUG00000009785 ortholog_one2many 1 retrogene
retro_ocun_312,
Pongo abelii ENSPPYG00000011019 ortholog_one2one 1 retrogene
retro_pabe_1483,
Pan troglodytes ENSPTRG00000013506 ortholog_one2one 1 retrogene
retro_ptro_3057,
Rattus norvegicus ENSRNOG00000006380 ortholog_one2many 1 retrogene
retro_rnor_1752,
Tupaia belangeri ENSTBEG00000013448 ortholog_one2one 1 retrogene
retro_tbel_383,
Tursiops truncatus ENSTTRG00000015410 ortholog_one2one 2 retrogenes
retro_ttru_1786, retro_ttru_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_697 55.19 52.49
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Download FASTA sequences of all ENSMODG00000003107 retrocopies